BLASTX nr result

ID: Coptis21_contig00034076 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034076
         (242 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAO94661.1| ATP Binding Cassette Transporter (CrWBC1) [Catha...   137   1e-30
ref|XP_002306254.1| white-brown-complex ABC transporter family [...   135   4e-30
emb|CBI21607.3| unnamed protein product [Vitis vinifera]              134   1e-29
ref|XP_002274622.1| PREDICTED: ABC transporter G family member 5...   134   1e-29
ref|XP_002309921.1| white-brown-complex ABC transporter family [...   133   1e-29

>emb|CAO94661.1| ATP Binding Cassette Transporter (CrWBC1) [Catharanthus roseus]
          Length = 626

 Score =  137 bits (344), Expect = 1e-30
 Identities = 67/80 (83%), Positives = 71/80 (88%)
 Frame = +3

Query: 3   VLKDVRCIAKPWEILAIVGPSGAGKSSLLEILAGRLTPQKASIYINGKPMEKANFKKISG 182
           VLK + C AKPWEILAIVGPSGAGKSSLLEILAG+LTPQ ASI++N KP EK  FKKISG
Sbjct: 65  VLKGINCRAKPWEILAIVGPSGAGKSSLLEILAGKLTPQSASIFVNQKPFEKTKFKKISG 124

Query: 183 YVTQKDTLFPFLTVEETLMF 242
           YVTQKDTLFP LTVEETLMF
Sbjct: 125 YVTQKDTLFPLLTVEETLMF 144


>ref|XP_002306254.1| white-brown-complex ABC transporter family [Populus trichocarpa]
           gi|222855703|gb|EEE93250.1| white-brown-complex ABC
           transporter family [Populus trichocarpa]
          Length = 643

 Score =  135 bits (339), Expect = 4e-30
 Identities = 66/80 (82%), Positives = 72/80 (90%)
 Frame = +3

Query: 3   VLKDVRCIAKPWEILAIVGPSGAGKSSLLEILAGRLTPQKASIYINGKPMEKANFKKISG 182
           VLKDV C AKPWEILAIVGPSGAGKSSLLEILAG+LTPQ  +I++N  P++KA FKKISG
Sbjct: 55  VLKDVFCKAKPWEILAIVGPSGAGKSSLLEILAGKLTPQNGTIFVNQNPIDKARFKKISG 114

Query: 183 YVTQKDTLFPFLTVEETLMF 242
           YVTQKDTLFP LTVEETLMF
Sbjct: 115 YVTQKDTLFPLLTVEETLMF 134


>emb|CBI21607.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score =  134 bits (336), Expect = 1e-29
 Identities = 66/80 (82%), Positives = 71/80 (88%)
 Frame = +3

Query: 3   VLKDVRCIAKPWEILAIVGPSGAGKSSLLEILAGRLTPQKASIYINGKPMEKANFKKISG 182
           VLKDV C AKPWEILAIVGPSGAGKSSLLEILAG++ PQ ASI +N KPM+KA FKKISG
Sbjct: 48  VLKDVNCEAKPWEILAIVGPSGAGKSSLLEILAGKIAPQTASICVNQKPMDKAQFKKISG 107

Query: 183 YVTQKDTLFPFLTVEETLMF 242
           +V QKDTLFP LTVEETLMF
Sbjct: 108 FVAQKDTLFPLLTVEETLMF 127


>ref|XP_002274622.1| PREDICTED: ABC transporter G family member 5 isoform 1 [Vitis
           vinifera]
          Length = 635

 Score =  134 bits (336), Expect = 1e-29
 Identities = 66/80 (82%), Positives = 71/80 (88%)
 Frame = +3

Query: 3   VLKDVRCIAKPWEILAIVGPSGAGKSSLLEILAGRLTPQKASIYINGKPMEKANFKKISG 182
           VLKDV C AKPWEILAIVGPSGAGKSSLLEILAG++ PQ ASI +N KPM+KA FKKISG
Sbjct: 48  VLKDVNCEAKPWEILAIVGPSGAGKSSLLEILAGKIAPQTASICVNQKPMDKAQFKKISG 107

Query: 183 YVTQKDTLFPFLTVEETLMF 242
           +V QKDTLFP LTVEETLMF
Sbjct: 108 FVAQKDTLFPLLTVEETLMF 127


>ref|XP_002309921.1| white-brown-complex ABC transporter family [Populus trichocarpa]
           gi|222852824|gb|EEE90371.1| white-brown-complex ABC
           transporter family [Populus trichocarpa]
          Length = 546

 Score =  133 bits (335), Expect = 1e-29
 Identities = 65/80 (81%), Positives = 70/80 (87%)
 Frame = +3

Query: 3   VLKDVRCIAKPWEILAIVGPSGAGKSSLLEILAGRLTPQKASIYINGKPMEKANFKKISG 182
           VLKDV C AKPWEILAIVGPSGAGKSSLLE+LAG+LTPQ  SI++N  P+ KA FKK SG
Sbjct: 3   VLKDVYCKAKPWEILAIVGPSGAGKSSLLEVLAGKLTPQSGSIFVNQNPINKAQFKKASG 62

Query: 183 YVTQKDTLFPFLTVEETLMF 242
           YVTQKDTLFP LTVEETLMF
Sbjct: 63  YVTQKDTLFPLLTVEETLMF 82


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