BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034059
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27
emb|CAN67320.1| hypothetical protein VITISV_039345 [Vitis vinifera]   125   4e-27
ref|XP_002884032.1| pentatricopeptide repeat-containing protein ...   124   1e-26
ref|XP_002521239.1| pentatricopeptide repeat-containing protein,...   119   3e-25
ref|XP_003555205.1| PREDICTED: pentatricopeptide repeat-containi...   118   4e-25

>ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17033
           [Vitis vinifera] gi|297744557|emb|CBI37819.3| unnamed
           protein product [Vitis vinifera]
          Length = 435

 Score =  125 bits (314), Expect = 4e-27
 Identities = 61/101 (60%), Positives = 79/101 (78%)
 Frame = -2

Query: 307 SIVLAYGRLGLFDEMRRILDEMEISGYTLDTICFNMVLSSYGTHKEVSEMVLWIQKMKNS 128
           S+V  YGR+GL ++M+RIL +M   G+ LDT+  NMVLSSYG + + SEMV W+Q+MKNS
Sbjct: 215 SVVYGYGRVGLSEDMQRILLQMGNEGFELDTVVSNMVLSSYGAYNKQSEMVSWLQRMKNS 274

Query: 127 NTPFSIRTYNTVLNSCPTVMSLLQDPKTIPLSILALMEELQ 5
           + PFSIRTYN+VLNSCP +MS+LQD KT P +I  LME L+
Sbjct: 275 SIPFSIRTYNSVLNSCPMIMSILQDLKTFPPTIDELMETLK 315


>emb|CAN67320.1| hypothetical protein VITISV_039345 [Vitis vinifera]
          Length = 371

 Score =  125 bits (314), Expect = 4e-27
 Identities = 61/101 (60%), Positives = 79/101 (78%)
 Frame = -2

Query: 307 SIVLAYGRLGLFDEMRRILDEMEISGYTLDTICFNMVLSSYGTHKEVSEMVLWIQKMKNS 128
           S+V  YGR+GL ++M+RIL +M   G+ LDT+  NMVLSSYG + + SEMV W+Q+MKNS
Sbjct: 151 SVVYGYGRVGLSEDMQRILLQMGNEGFELDTVVSNMVLSSYGAYNKQSEMVSWLQRMKNS 210

Query: 127 NTPFSIRTYNTVLNSCPTVMSLLQDPKTIPLSILALMEELQ 5
           + PFSIRTYN+VLNSCP +MS+LQD KT P +I  LME L+
Sbjct: 211 SIPFSIRTYNSVLNSCPMIMSILQDLKTFPPTIDELMETLK 251


>ref|XP_002884032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329872|gb|EFH60291.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 504

 Score =  124 bits (310), Expect = 1e-26
 Identities = 55/96 (57%), Positives = 73/96 (76%)
 Frame = -2

Query: 307 SIVLAYGRLGLFDEMRRILDEMEISGYTLDTICFNMVLSSYGTHKEVSEMVLWIQKMKNS 128
           S++  YGRLGLFD+M R++  ME  G+ +DT+C NMVLSSYG H  + +M  W+QK+K  
Sbjct: 283 SVLYGYGRLGLFDDMNRVVHRMETEGHKIDTVCSNMVLSSYGAHDALPQMGSWLQKLKGF 342

Query: 127 NTPFSIRTYNTVLNSCPTVMSLLQDPKTIPLSILAL 20
           N PFSIRTYN+VLNSCPT+MSLL+D  + P+S+  L
Sbjct: 343 NVPFSIRTYNSVLNSCPTIMSLLKDLNSCPVSLSEL 378


>ref|XP_002521239.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539507|gb|EEF41095.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 460

 Score =  119 bits (297), Expect = 3e-25
 Identities = 53/101 (52%), Positives = 75/101 (74%)
 Frame = -2

Query: 304 IVLAYGRLGLFDEMRRILDEMEISGYTLDTICFNMVLSSYGTHKEVSEMVLWIQKMKNSN 125
           +V AYG LG F+EM + L +ME +G+ +DT+C NM+L+SYG H  + EMVLW+QKMK+  
Sbjct: 241 VVYAYGSLGSFEEMNKCLHQMERAGFRVDTVCSNMILASYGAHNALPEMVLWLQKMKDLG 300

Query: 124 TPFSIRTYNTVLNSCPTVMSLLQDPKTIPLSILALMEELQK 2
            PFS+RT N+ LNSCPT+MS++Q+    P+SI  LM+ L +
Sbjct: 301 IPFSLRTCNSALNSCPTIMSMMQNSNDFPISIHDLMKILSE 341


>ref|XP_003555205.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17033-like [Glycine max]
          Length = 457

 Score =  118 bits (296), Expect = 4e-25
 Identities = 56/102 (54%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
 Frame = -2

Query: 307 SIVLAYGRLGLFDEMRRILDEMEISGYTLDTICFNMVLSSYGTHKEVSEMVLWIQKMKNS 128
           SIV  YGRLGLF++M R++DEME +G+ +DT+C+NMVLS+YG H E  EMV W+++M NS
Sbjct: 221 SIVYGYGRLGLFNDMNRVVDEMERNGFAVDTVCYNMVLSTYGIHGEHVEMVRWLRRMSNS 280

Query: 127 NTPFSIRTYNTVLNSCPTVMSLLQD-PKTIPLSILALMEELQ 5
             PFS+RTYN+V NSCP++  + +D  K   LSI  L E L+
Sbjct: 281 GVPFSVRTYNSVSNSCPSITRMTRDLSKLALLSISELKEGLE 322