BLASTX nr result
ID: Coptis21_contig00034020
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00034020
(288 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI38165.3| unnamed protein product [Vitis vinifera] 151 6e-35
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi... 151 6e-35
ref|XP_002310520.1| predicted protein [Populus trichocarpa] gi|2... 149 2e-34
ref|XP_002517667.1| pentatricopeptide repeat-containing protein,... 147 1e-33
ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containi... 146 2e-33
>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 151 bits (381), Expect = 6e-35
Identities = 72/94 (76%), Positives = 82/94 (87%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
VF+GM RN+V+WNSLITCYEQNGPA+EAL +F MM+ G EPDEVTLASVVSACA+L A
Sbjct: 204 VFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCA 263
Query: 184 IKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKC 285
+KEG QIH RV+K KF+DDLVLGNALVDMYAKC
Sbjct: 264 LKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKC 297
Score = 69.3 bits (168), Expect = 3e-10
Identities = 34/95 (35%), Positives = 57/95 (60%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
+F M + SWNS+++ + Q+ E+L F +M F +E + S +SACA L+
Sbjct: 103 LFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMD 162
Query: 184 IKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKCG 288
+ G+Q+H V K ++ D+ +G+AL+DMY+KCG
Sbjct: 163 LNMGTQVHALVSK-SRYSTDVYMGSALIDMYSKCG 196
Score = 58.2 bits (139), Expect = 7e-07
Identities = 33/95 (34%), Positives = 46/95 (48%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
+F+ M+ RN+VSWN+LI Y QNG EALRLF + P T +++
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLL-------- 388
Query: 184 IKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKCG 288
K D+ +GN+L+DMY KCG
Sbjct: 389 -----------------KSDIFVGNSLIDMYMKCG 406
Score = 57.8 bits (138), Expect = 9e-07
Identities = 28/64 (43%), Positives = 41/64 (64%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
VF M R+ VSWN++I Y QNG EAL++F +M+ G +PD VT+ V+ AC+
Sbjct: 414 VFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGL 473
Query: 184 IKEG 195
++EG
Sbjct: 474 VEEG 477
>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 151 bits (381), Expect = 6e-35
Identities = 72/94 (76%), Positives = 82/94 (87%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
VF+GM RN+V+WNSLITCYEQNGPA+EAL +F MM+ G EPDEVTLASVVSACA+L A
Sbjct: 204 VFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCA 263
Query: 184 IKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKC 285
+KEG QIH RV+K KF+DDLVLGNALVDMYAKC
Sbjct: 264 LKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKC 297
Score = 82.8 bits (203), Expect = 3e-14
Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
+F+ M+ RN+VSWN+LI Y QNG EALRLF + P T +++SACA L
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLAD 396
Query: 184 IKEGSQIHTRVIK--FE---KFKDDLVLGNALVDMYAKCG 288
+ G Q HT V+K FE + D+ +GN+L+DMY KCG
Sbjct: 397 LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCG 436
Score = 69.3 bits (168), Expect = 3e-10
Identities = 34/95 (35%), Positives = 57/95 (60%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
+F M + SWNS+++ + Q+ E+L F +M F +E + S +SACA L+
Sbjct: 103 LFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMD 162
Query: 184 IKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKCG 288
+ G+Q+H V K ++ D+ +G+AL+DMY+KCG
Sbjct: 163 LNMGTQVHALVSK-SRYSTDVYMGSALIDMYSKCG 196
Score = 57.8 bits (138), Expect = 9e-07
Identities = 28/64 (43%), Positives = 41/64 (64%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
VF M R+ VSWN++I Y QNG EAL++F +M+ G +PD VT+ V+ AC+
Sbjct: 444 VFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGL 503
Query: 184 IKEG 195
++EG
Sbjct: 504 VEEG 507
>ref|XP_002310520.1| predicted protein [Populus trichocarpa] gi|222853423|gb|EEE90970.1|
predicted protein [Populus trichocarpa]
Length = 710
Score = 149 bits (376), Expect = 2e-34
Identities = 71/95 (74%), Positives = 80/95 (84%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
VF+GM +N+VSWN LITCYEQNGPA EAL F M E GF+PDEVTLASVVSACATL A
Sbjct: 213 VFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAA 272
Query: 184 IKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKCG 288
KEG QIH RV+K +KF++DL+LGNALVDMYAKCG
Sbjct: 273 FKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCG 307
Score = 69.3 bits (168), Expect = 3e-10
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Frame = +1
Query: 1 NVFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLL 180
++F + ++IVSWN+LI Y QNG EAL LF + P T ++++A A L
Sbjct: 345 SMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLA 404
Query: 181 AIKEGSQIHTRVIK----FEKFKD-DLVLGNALVDMYAKCG 288
++ G Q H+ V+K F+ ++ D+ +GN+L+DMY KCG
Sbjct: 405 DLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCG 445
Score = 62.4 bits (150), Expect = 4e-08
Identities = 34/95 (35%), Positives = 55/95 (57%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
+F+ M ++ SWNS+I + Q+ EAL F M F ++ + S +SAC+ L
Sbjct: 112 LFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKD 171
Query: 184 IKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKCG 288
+K G+QIH + K K+ D+ +G+ L+D Y+KCG
Sbjct: 172 LKLGAQIHGLISK-SKYSLDVFMGSGLIDFYSKCG 205
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
VF M ++ VSWN++I Y QNG EAL LF +M+E G +PD VT+ + AC+
Sbjct: 453 VFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGL 512
Query: 184 IKEG 195
++EG
Sbjct: 513 VEEG 516
>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 628
Score = 147 bits (370), Expect = 1e-33
Identities = 69/95 (72%), Positives = 80/95 (84%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
VF+GM RN+VSWNSLITCYEQNGP+ EAL +F MME GFEPDEVTLASVVSACA+L A
Sbjct: 208 VFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAA 267
Query: 184 IKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKCG 288
K+G +IH V+K +K +DDL+L NALVDMYAKCG
Sbjct: 268 AKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCG 302
Score = 79.3 bits (194), Expect = 3e-13
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
+F M RN+VSWN+LI Y QNG EALRLF + P T ++++ACA L
Sbjct: 341 LFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACANLAD 400
Query: 184 IKEGSQIHTRVIKFE-KF----KDDLVLGNALVDMYAKCG 288
++ G Q H V+K +F + D+ +GNAL+DMY KCG
Sbjct: 401 LQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCG 440
Score = 70.9 bits (172), Expect = 1e-10
Identities = 40/95 (42%), Positives = 58/95 (61%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
+F M + SWNSLI + Q+ EAL F +M GF +E T S +SACA L
Sbjct: 107 LFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKD 166
Query: 184 IKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKCG 288
+K G+QIH ++K +F D+ +G+AL+D+Y+KCG
Sbjct: 167 LKIGTQIHGLMLK-SQFLLDVYMGSALIDIYSKCG 200
Score = 55.8 bits (133), Expect = 4e-06
Identities = 27/64 (42%), Positives = 39/64 (60%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
+F M R+ VSWN++I Y QNG EAL LF +M+ G +PD VT+ + AC+
Sbjct: 448 IFENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHVTMIGALCACSHAGL 507
Query: 184 IKEG 195
++EG
Sbjct: 508 VQEG 511
>ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 146 bits (368), Expect = 2e-33
Identities = 68/95 (71%), Positives = 85/95 (89%)
Frame = +1
Query: 1 NVFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLL 180
+VF+ M+VR+ VSWNSLITCYEQNGP +EAL++F EM++ G EPDEVTLASVVSACAT+
Sbjct: 207 SVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATIS 266
Query: 181 AIKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKC 285
AIKEG QIH RV+K ++F++DL+LGNAL+DMYAKC
Sbjct: 267 AIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKC 301
Score = 78.6 bits (192), Expect = 5e-13
Identities = 42/96 (43%), Positives = 62/96 (64%)
Frame = +1
Query: 1 NVFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLL 180
++F M + SWNS+I+ +EQ+G +EAL F +M GF +E + S +SACA L
Sbjct: 106 HIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQ 165
Query: 181 AIKEGSQIHTRVIKFEKFKDDLVLGNALVDMYAKCG 288
+K GSQIH+ V + + D+ +G+ALVDMY+KCG
Sbjct: 166 DLKLGSQIHSLVYR-SNYLSDVYMGSALVDMYSKCG 200
Score = 72.4 bits (176), Expect = 4e-11
Identities = 38/100 (38%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
+F+ M V+++++WN+LI QNG EAL LF + P T ++++ACA L
Sbjct: 341 MFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLAD 400
Query: 184 IKEGSQIHTRVIK----FEKFKD-DLVLGNALVDMYAKCG 288
++ G Q H+ V+K F+ +D D+ +GN+L+DMY KCG
Sbjct: 401 LQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCG 440
Score = 57.4 bits (137), Expect = 1e-06
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +1
Query: 4 VFNGMSVRNIVSWNSLITCYEQNGPANEALRLFFEMMEFGFEPDEVTLASVVSACATLLA 183
VF M ++ VSWN++I Y QNG N+AL +F +M+E G PD VT+ V+ AC+
Sbjct: 448 VFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGL 507
Query: 184 IKEG 195
+ EG
Sbjct: 508 LDEG 511