BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033892
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]   100   3e-21
ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containi...    95   7e-18
ref|XP_002307076.1| predicted protein [Populus trichocarpa] gi|2...    90   2e-16
ref|XP_003617675.1| Pentatricopeptide repeat-containing protein ...    85   1e-15
ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containi...    84   5e-15

>emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  100 bits (249), Expect(2) = 3e-21
 Identities = 49/84 (58%), Positives = 61/84 (72%)
 Frame = -3

Query: 338 PD*VVISCMLSCFWEC*KDYESKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKL 159
           PD +VISCMLS F    + +E+KAFHGLIIRR+Y  D+MV ++LLSMYCK G L LAEK 
Sbjct: 666 PDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKF 725

Query: 158 FNGPCEWETDTWNCIVAGYGKVGL 87
           F    E   + WN +V+GYGK+GL
Sbjct: 726 FGRVNEQNFEAWNLMVSGYGKIGL 749



 Score = 26.2 bits (56), Expect(2) = 3e-21
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 78  CIGTFRKMQHLGIE 37
           CIG FR+MQ LGIE
Sbjct: 753 CIGLFREMQCLGIE 766


>ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 48/87 (55%), Positives = 59/87 (67%)
 Frame = -3

Query: 338 PD*VVISCMLSCFWEC*KDYESKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKL 159
           PD +VISCMLS F    + +E+KAFHGLIIRR+Y  D+MV ++LLSMYCK G L LAEK 
Sbjct: 337 PDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKF 396

Query: 158 FNGPCEWETDTWNCIVAGYGKVGLETS 78
           F    E   + WN +V+GYG   L  S
Sbjct: 397 FGRVNEQNFEAWNLMVSGYGATHLARS 423


>ref|XP_002307076.1| predicted protein [Populus trichocarpa] gi|222856525|gb|EEE94072.1|
           predicted protein [Populus trichocarpa]
          Length = 733

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 44/81 (54%), Positives = 56/81 (69%)
 Frame = -3

Query: 344 VDPD*VVISCMLSCFWEC*KDYESKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAE 165
           V PD +V+SC+L  F       E KAFHGLI+RRNY  D  V+++LLSMYCK G L+ AE
Sbjct: 332 VYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAE 391

Query: 164 KLFNGPCEWETDTWNCIVAGY 102
           KLF+G  EW  ++WN +V GY
Sbjct: 392 KLFDGVHEWSKESWNTMVFGY 412


>ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355519010|gb|AET00634.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 758

 Score = 84.7 bits (208), Expect(2) = 1e-15
 Identities = 44/85 (51%), Positives = 56/85 (65%)
 Frame = -3

Query: 344 VDPD*VVISCMLSCFWEC*KDYESKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAE 165
           V PD +VI C+LS F      Y  KAFHGLIIRR+Y  D+MV +SLLSMYCK G L  AE
Sbjct: 311 VCPDGMVIGCILSGFGNSVDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAE 370

Query: 164 KLFNGPCEWETDTWNCIVAGYGKVG 90
           +LF    +   + WN ++ GYG++G
Sbjct: 371 RLFQ-RSQGSIEYWNFMIVGYGRIG 394



 Score = 23.1 bits (48), Expect(2) = 1e-15
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 78  CIGTFRKMQHLGI 40
           CI  FR+MQ+LGI
Sbjct: 399 CIQLFREMQYLGI 411


>ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Glycine max]
          Length = 750

 Score = 84.3 bits (207), Expect(2) = 5e-15
 Identities = 44/85 (51%), Positives = 56/85 (65%)
 Frame = -3

Query: 344 VDPD*VVISCMLSCFWEC*KDYESKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAE 165
           + PD VV+ C+LS F      ++ KAFHG+IIRR Y  D+ V+ SLL MYCK G L LAE
Sbjct: 302 IRPDGVVVGCVLSGFGNSMDVFQGKAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAE 361

Query: 164 KLFNGPCEWETDTWNCIVAGYGKVG 90
           ++F   C+   D WN +V GYGKVG
Sbjct: 362 RIF-PLCQGSGDGWNFMVFGYGKVG 385



 Score = 21.2 bits (43), Expect(2) = 5e-15
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 78  CIGTFRKMQHLGI 40
           C+  FR+MQ LGI
Sbjct: 390 CVELFREMQWLGI 402