BLASTX nr result

ID: Coptis21_contig00033657 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033657
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                117   1e-24
emb|CBI25270.3| unnamed protein product [Vitis vinifera]               97   1e-18
emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]    94   2e-17
emb|CAN69367.1| hypothetical protein VITISV_035520 [Vitis vinifera]    91   8e-17
ref|XP_002329064.1| predicted protein [Populus trichocarpa] gi|2...    91   1e-16

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  117 bits (293), Expect = 1e-24
 Identities = 62/136 (45%), Positives = 87/136 (63%)
 Frame = +2

Query: 2   LPYAVGLPTARDLWLTLEKRLSTISVAHVMQLKNQLQDFKKGDLSMADYLQKIKIIADSL 181
           LP  +G+  +R LW +LE+R S  S  HV  L++++Q   KGD SM D+L  IK I++ L
Sbjct: 350 LPLTIGMEDSRSLWQSLERRFSGASRTHVHSLRSKIQTIHKGDSSMTDFLNSIKEISNKL 409

Query: 182 AATGSPISDSDLIYHTLRGLPEEYNSFTTSIRTRSANDPVHPEELHSLLLNEEITLIQRN 361
           AA G P+S+SDL+ + L GLP+EY SF  SI TR  N+ V  +ELH LLL++EI+L +R 
Sbjct: 410 AAAGEPLSESDLVAYILSGLPDEYESFVDSIETR--NESVTADELHGLLLSKEISLQKRK 467

Query: 362 RGVTLSPEQIHQAFAA 409
              + S      A+AA
Sbjct: 468 TRASSSSNAPFHAYAA 483


>emb|CBI25270.3| unnamed protein product [Vitis vinifera]
          Length = 227

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 55/116 (47%), Positives = 72/116 (62%)
 Frame = +2

Query: 14  VGLPTARDLWLTLEKRLSTISVAHVMQLKNQLQDFKKGDLSMADYLQKIKIIADSLAATG 193
           +GL TA ++W  LEK  S  S A +MQL  QLQ  KKG LSM +YL KIK I D+L A G
Sbjct: 106 IGLDTASEIWTALEKIFSAASKARIMQLHFQLQTTKKGGLSMMEYLLKIKSIVDNLLAIG 165

Query: 194 SPISDSDLIYHTLRGLPEEYNSFTTSIRTRSANDPVHPEELHSLLLNEEITLIQRN 361
             I++ D I + L GL  +YNSF   I   S ++P+  EE+HS+LL  E  L Q++
Sbjct: 166 ENITEQDRILYLLAGLGAKYNSFV--ITVTSGHEPLSLEEIHSMLLTHENRLEQQH 219


>emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]
          Length = 2220

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 54/137 (39%), Positives = 80/137 (58%)
 Frame = +2

Query: 14   VGLPTARDLWLTLEKRLSTISVAHVMQLKNQLQDFKKGDLSMADYLQKIKIIADSLAATG 193
            +G  ++   W  LEK  S+ S A +MQL+ +LQ  KKG LSM DY+ K+K  ADSLAA G
Sbjct: 954  IGHNSSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIG 1013

Query: 194  SPISDSDLIYHTLRGLPEEYNSFTTSIRTRSANDPVHPEELHSLLLNEEITLIQRNRGVT 373
             P+S+ D + + L GL  +YN+  T+I  R  +D +  E +HS+LL  E  L Q++    
Sbjct: 1014 EPVSEQDQVMNLLGGLGSDYNAVVTAINIR--DDKISIEAVHSMLLAFEHRLEQQSSIKQ 1071

Query: 374  LSPEQIHQAFAAFHMNG 424
             SP   + A ++ +  G
Sbjct: 1072 FSPISANYASSSNNRGG 1088


>emb|CAN69367.1| hypothetical protein VITISV_035520 [Vitis vinifera]
          Length = 1083

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 52/123 (42%), Positives = 72/123 (58%)
 Frame = +2

Query: 14  VGLPTARDLWLTLEKRLSTISVAHVMQLKNQLQDFKKGDLSMADYLQKIKIIADSLAATG 193
           +G  ++   W  LEK  S+ S A +MQL+ +LQ  KKG LSM DY+ K+K  ADSLAA G
Sbjct: 5   IGHNSSHSTWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIG 64

Query: 194 SPISDSDLIYHTLRGLPEEYNSFTTSIRTRSANDPVHPEELHSLLLNEEITLIQRNRGVT 373
            P+S+ D + + L GL  +YN   T I  R  +D +  E +HS+LL  E  L Q++    
Sbjct: 65  EPVSEQDQVMNLLXGLGSDYNXVVTXINIR--DDKISIEAVHSMLLAFEHRLEQQSSIEQ 122

Query: 374 LSP 382
            SP
Sbjct: 123 FSP 125


>ref|XP_002329064.1| predicted protein [Populus trichocarpa] gi|222839735|gb|EEE78058.1|
           predicted protein [Populus trichocarpa]
          Length = 270

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
 Frame = +2

Query: 2   LPYAVGLPTARDLWLTLEKRLSTISVAHVMQLKNQLQDFKKGDLSMADYLQKIKIIADSL 181
           L   +   T+R++WL LE   S++S A V+Q++ QL + KKG ++  ++   +K +AD L
Sbjct: 106 LTQVMSYTTSREVWLALENNFSSLSRAKVIQIRTQLANAKKGAMTANEFFLSVKRMADEL 165

Query: 182 AATGSPISDSDLIYHTLRGLPEEYNSFTTSIRTRSANDPVHPEELHSLLLNEEITLIQRN 361
           A  G P+ + D+I + L GL +EY+S  ++I +R   DPV  EEL SLLL  E  +   N
Sbjct: 166 ALAGQPLPNDDIITYILAGLGQEYDSLASTISSR--RDPVSLEELFSLLLICESRINHNN 223

Query: 362 RG-------VTLSPEQIHQ 397
           +        VT SP+Q H+
Sbjct: 224 QPLLPSANLVTTSPQQFHR 242


Top