BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033511
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    59   5e-07
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A...    58   7e-07
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...    58   7e-07
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                   56   3e-06
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...    56   3e-06

>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 26/64 (40%), Positives = 37/64 (57%)
 Frame = -1

Query: 196 FSLTDTYHCIRHTEVHVNWSKLVWFPNRIPRHSFICRMALLDGLKTRQKRMQWHVVTDDI 17
           FS + T+  +    V V W K VWF +RIP+H+FIC +A    L TR +  QW +    +
Sbjct: 136 FSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTV 195

Query: 16  CILC 5
           C+LC
Sbjct: 196 CVLC 199


>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 342

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/78 (35%), Positives = 38/78 (48%)
 Frame = -1

Query: 235 EDEVRWSMSMKGDFSLTDTYHCIRHTEVHVNWSKLVWFPNRIPRHSFICRMALLDGLKTR 56
           ED   W    +  FS+T  +  IR     V WS L+W    IP+HSF   +A+ D L TR
Sbjct: 168 EDRWVWVPGSRDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDRLSTR 227

Query: 55  QKRMQWHVVTDDICILCG 2
            +  +W       C+LCG
Sbjct: 228 DRLSRWDRSIPLSCLLCG 245


>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
           AT4g02490 [Arabidopsis thaliana]
          Length = 657

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
 Frame = -1

Query: 235 EDEVRWSMSMK---GDFSLTDTYHCIRHTEVHVNWSKLVWFPNRIPRHSFICRMALLDGL 65
           +D   W +  +     FS  DT+  ++   V V+W K VWF N++P+H+FI  +   + L
Sbjct: 548 DDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKAVWFTNQVPKHAFISWVTAWNRL 607

Query: 64  KTRQKRMQWHVVTDDICILC 5
            TR +   W ++    C+LC
Sbjct: 608 HTRDRLRSWGLIVPAECVLC 627


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 36/64 (56%)
 Frame = -1

Query: 196 FSLTDTYHCIRHTEVHVNWSKLVWFPNRIPRHSFICRMALLDGLKTRQKRMQWHVVTDDI 17
           FS + T++  R   V   WS +VWFP  IPRH+F+    +L  L T+ +  QW + +D  
Sbjct: 410 FSSSRTWNLTRTVHVIAPWSSIVWFPLAIPRHAFLHWQVMLFRLPTKDRLQQWGITSDAT 469

Query: 16  CILC 5
           C LC
Sbjct: 470 CRLC 473


>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = -1

Query: 235 EDEVRWSMS---MKGDFSLTDTYHCIRHTEVHVNWSKLVWFPNRIPRHSFICRMALLDGL 65
           ED VRW  +    K  F+  +T+   R  ++ VNW K VWF +  P++S +  +A+ + L
Sbjct: 250 EDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRL 309

Query: 64  KTRQKRMQWHVVTDDICILC 5
            T  + + W+   D  C+LC
Sbjct: 310 TTGDRMLSWNAGADSSCVLC 329