BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033491
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABZ10949.1| fusion protein [Southern tomato virus]                  57   2e-06
ref|YP_002321510.1| putative coat protein p42 [Southern tomato v...    57   2e-06
ref|YP_002321509.1| fusion protein p122 [Southern tomato virus] ...    57   2e-06

>gb|ABZ10949.1| fusion protein [Southern tomato virus]
          Length = 1062

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 33/117 (28%), Positives = 60/117 (51%)
 Frame = -1

Query: 407 YRFCSWLKSPEGNKALIEKQIEKQTRSKLKRQAPPQATASDGALLSIARVQENGCNSKIK 228
           + F +W+K+ EG  AL E    +    KL+++     + ++ ALL     Q N      K
Sbjct: 105 FDFLNWVKTKEGKDALGETMYAQ----KLEQKGRGDFSIAEVALLHCFETQRNDMLRDEK 160

Query: 227 SIRLEADKIVEELKREICHVQEQAEKDIRDVRREMLPMSGYVGIDKIAYAHDCWAAY 57
            +RL+A++ + +L+R+I   +E+ E+D+   +    P+S YVG+        CW+ Y
Sbjct: 161 DVRLKAEEEIADLQRKIVKRREKLEEDLIATKSNYEPVSRYVGLSDYELNCKCWSLY 217


>ref|YP_002321510.1| putative coat protein p42 [Southern tomato virus]
           gi|133711704|gb|ABO36237.1| putative coat protein p42
           [Southern tomato virus] gi|167077479|gb|ABZ10948.1|
           putative coat protein [Southern tomato virus]
          Length = 377

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 33/117 (28%), Positives = 60/117 (51%)
 Frame = -1

Query: 407 YRFCSWLKSPEGNKALIEKQIEKQTRSKLKRQAPPQATASDGALLSIARVQENGCNSKIK 228
           + F +W+K+ EG  AL E    +    KL+++     + ++ ALL     Q N      K
Sbjct: 105 FDFLNWVKTKEGKDALGETMYAQ----KLEQKGRGDFSIAEVALLHCFETQRNDMLRDEK 160

Query: 227 SIRLEADKIVEELKREICHVQEQAEKDIRDVRREMLPMSGYVGIDKIAYAHDCWAAY 57
            +RL+A++ + +L+R+I   +E+ E+D+   +    P+S YVG+        CW+ Y
Sbjct: 161 DVRLKAEEEIADLQRKIVKRREKLEEDLIATKSNYEPVSRYVGLSDYELNCKCWSLY 217


>ref|YP_002321509.1| fusion protein p122 [Southern tomato virus]
           gi|133711705|gb|ABO36238.1| fusion protein p122
           [Southern tomato virus]
          Length = 1062

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 33/117 (28%), Positives = 60/117 (51%)
 Frame = -1

Query: 407 YRFCSWLKSPEGNKALIEKQIEKQTRSKLKRQAPPQATASDGALLSIARVQENGCNSKIK 228
           + F +W+K+ EG  AL E    +    KL+++     + ++ ALL     Q N      K
Sbjct: 105 FDFLNWVKTKEGKDALGETMYAQ----KLEQKGRGDFSIAEVALLHCFETQRNDMLRDEK 160

Query: 227 SIRLEADKIVEELKREICHVQEQAEKDIRDVRREMLPMSGYVGIDKIAYAHDCWAAY 57
            +RL+A++ + +L+R+I   +E+ E+D+   +    P+S YVG+        CW+ Y
Sbjct: 161 DVRLKAEEEIADLQRKIVKRREKLEEDLIATKSNYEPVSRYVGLSDYELNCKCWSLY 217