BLASTX nr result
ID: Coptis21_contig00033472
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00033472
(1180 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containi... 362 1e-97
ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containi... 360 3e-97
ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containi... 360 5e-97
ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|2... 357 3e-96
ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containi... 356 6e-96
>ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like
[Glycine max]
Length = 818
Score = 362 bits (929), Expect = 1e-97
Identities = 169/221 (76%), Positives = 195/221 (88%)
Frame = +3
Query: 33 GSMGICWMNFQQMPIEPGISVFGAMLGACKIYKNVQLGEMAAKRLFELEPKEGGYHVLLA 212
G + W Q+MPI+PGISV GAMLGACKI+KNV+LGE AA++LF+L+P EGGYHVLLA
Sbjct: 598 GQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLA 657
Query: 213 NIYATASMWKDVAKVRTMMKNKGLQKTPGCSLVELRNEVHTFYSGSTTHPQSGKIYAKLE 392
NIYA+ SMW VAKVRT M++KGL KTPGCS VELRNE+HTFYSGST HP+S KIYA LE
Sbjct: 658 NIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLE 717
Query: 393 SLVDKIKAVGYVPDTNSVHDVEDDVQEQLLSSHSEKLAIAFGLINTNPGTTIHIRKNLRV 572
+L D+IKA GYVPD +S+HDVE+DV++QLLSSHSE+LAIAFGL+NT+PGTT+HIRKNLRV
Sbjct: 718 TLGDEIKAAGYVPDPDSIHDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRV 777
Query: 573 CGDCHSATKYISLVTGREIIVRDMHRFHHFKNGCCSCGDYW 695
CGDCH TKYISLVTGREIIVRD+ RFHHFKNG CSCGDYW
Sbjct: 778 CGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818
>ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like
[Cucumis sativus]
Length = 821
Score = 360 bits (925), Expect = 3e-97
Identities = 170/221 (76%), Positives = 193/221 (87%)
Frame = +3
Query: 33 GSMGICWMNFQQMPIEPGISVFGAMLGACKIYKNVQLGEMAAKRLFELEPKEGGYHVLLA 212
G + W + MPI PGI+V+GAMLGACKI+KN+++GE AAK+LFEL P EGGYHVLLA
Sbjct: 601 GRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLA 660
Query: 213 NIYATASMWKDVAKVRTMMKNKGLQKTPGCSLVELRNEVHTFYSGSTTHPQSGKIYAKLE 392
NIYA+ S W VA+VR M+ KGL+KTPGCS+VELRNEVH+FYSGSTTHPQS +IYA LE
Sbjct: 661 NIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLE 720
Query: 393 SLVDKIKAVGYVPDTNSVHDVEDDVQEQLLSSHSEKLAIAFGLINTNPGTTIHIRKNLRV 572
LV +IKA GYVPDTN + DVEDDVQEQLL+SHSEKLAIAFGL+NT+PGTTIH+RKNLRV
Sbjct: 721 ELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRV 780
Query: 573 CGDCHSATKYISLVTGREIIVRDMHRFHHFKNGCCSCGDYW 695
CGDCH+ATKYISLVTGREIIVRDM RFHHFKNG CSCGDYW
Sbjct: 781 CGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821
>ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like
[Glycine max]
Length = 816
Score = 360 bits (923), Expect = 5e-97
Identities = 167/221 (75%), Positives = 192/221 (86%)
Frame = +3
Query: 33 GSMGICWMNFQQMPIEPGISVFGAMLGACKIYKNVQLGEMAAKRLFELEPKEGGYHVLLA 212
G + W Q MP++PGI+V GAMLGAC+I+KNV+LGE A LF+L+P +GGYHVLLA
Sbjct: 596 GRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLA 655
Query: 213 NIYATASMWKDVAKVRTMMKNKGLQKTPGCSLVELRNEVHTFYSGSTTHPQSGKIYAKLE 392
N+YA+ASMW VA+VRT M+ KG+QKTPGCSLVELRNEVHTFYSGST HPQS +IYA LE
Sbjct: 656 NMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLE 715
Query: 393 SLVDKIKAVGYVPDTNSVHDVEDDVQEQLLSSHSEKLAIAFGLINTNPGTTIHIRKNLRV 572
+L D++KA GYVPDTNS+HDVE+DV+EQLLSSHSE+LAIAFGL+NT GT IHIRKNLRV
Sbjct: 716 TLGDEMKAAGYVPDTNSIHDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRV 775
Query: 573 CGDCHSATKYISLVTGREIIVRDMHRFHHFKNGCCSCGDYW 695
CGDCH ATKYISLVTGREIIVRD+ RFHHFKNG CSCGDYW
Sbjct: 776 CGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816
>ref|XP_002303960.1| predicted protein [Populus trichocarpa] gi|222841392|gb|EEE78939.1|
predicted protein [Populus trichocarpa]
Length = 704
Score = 357 bits (916), Expect = 3e-96
Identities = 168/221 (76%), Positives = 195/221 (88%)
Frame = +3
Query: 33 GSMGICWMNFQQMPIEPGISVFGAMLGACKIYKNVQLGEMAAKRLFELEPKEGGYHVLLA 212
G + W Q+MPI+PGI+V+GAMLGACKI+KNV LGE AA +F+L P +GGYHVLLA
Sbjct: 484 GRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLA 543
Query: 213 NIYATASMWKDVAKVRTMMKNKGLQKTPGCSLVELRNEVHTFYSGSTTHPQSGKIYAKLE 392
NIYATASMW VAKVRT+M+ GLQKTPGCSLVE+ NEVH+FYSG+T+HPQS KIY+ LE
Sbjct: 544 NIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLE 603
Query: 393 SLVDKIKAVGYVPDTNSVHDVEDDVQEQLLSSHSEKLAIAFGLINTNPGTTIHIRKNLRV 572
+LVD+I+A GYVPDTNS+HDVEDDV+ QLL++HSEKLAIAFGL+NT+ GT IHIRKNLRV
Sbjct: 604 TLVDEIRAAGYVPDTNSIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRV 663
Query: 573 CGDCHSATKYISLVTGREIIVRDMHRFHHFKNGCCSCGDYW 695
CGDCH+ATKYISLVTGREIIVRDMHRFH FK+G CSCGDYW
Sbjct: 664 CGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704
>ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like
[Cucumis sativus]
Length = 821
Score = 356 bits (914), Expect = 6e-96
Identities = 168/221 (76%), Positives = 191/221 (86%)
Frame = +3
Query: 33 GSMGICWMNFQQMPIEPGISVFGAMLGACKIYKNVQLGEMAAKRLFELEPKEGGYHVLLA 212
G + W + MPI PGI+V+GA GACKI+KN+++GE AAK+LFEL P EGGYHVLLA
Sbjct: 601 GRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLA 660
Query: 213 NIYATASMWKDVAKVRTMMKNKGLQKTPGCSLVELRNEVHTFYSGSTTHPQSGKIYAKLE 392
NIYA+ S W VA+VR M+ KGL+KTPGCS+VELRNEVH+FYSGSTTHPQS +IYA LE
Sbjct: 661 NIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLE 720
Query: 393 SLVDKIKAVGYVPDTNSVHDVEDDVQEQLLSSHSEKLAIAFGLINTNPGTTIHIRKNLRV 572
LV +IKA GYVPDTN + DVEDDVQEQLL+SHSEKLAIAFGL+NT+PGTTIH+RKNLRV
Sbjct: 721 ELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRV 780
Query: 573 CGDCHSATKYISLVTGREIIVRDMHRFHHFKNGCCSCGDYW 695
CGDCH+ATKYISLVTGREIIVRDM RFHHFKNG CSCGDYW
Sbjct: 781 CGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821