BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033456
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr...    71   1e-10
gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thali...    70   1e-10
gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi...    65   4e-09
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    63   2e-08
gb|AAC62796.1| contains similarity to reverse transcriptase (Pfa...    61   8e-08

>gb|ABW81018.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
          Length = 672

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
 Frame = +1

Query: 7   FMVVDSPSQYNAILGRRWIHEMKAVPSTYYQVIRFPTPTGTYEVRGDQVTSKN----SHR 174
           F+V D P+ YN ILG  WI+ MKAVPSTYYQ I+FPT  G   +RGDQ  S+     SHR
Sbjct: 609 FVVFDKPAAYNIILGTPWIYRMKAVPSTYYQCIKFPTSNGVETIRGDQEASRTCYLASHR 668


>gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thaliana]
          Length = 1295

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 30/52 (57%), Positives = 39/52 (75%)
 Frame = +1

Query: 7   FMVVDSPSQYNAILGRRWIHEMKAVPSTYYQVIRFPTPTGTYEVRGDQVTSK 162
           F V D P+ YN ILG  W++EMKAVPSTY+Q ++FPTPTG  ++ G Q TS+
Sbjct: 542 FTVFDRPAAYNIILGTPWLYEMKAVPSTYHQCVKFPTPTGVKQILGSQRTSR 593


>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 889

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/58 (51%), Positives = 41/58 (70%)
 Frame = +1

Query: 7   FMVVDSPSQYNAILGRRWIHEMKAVPSTYYQVIRFPTPTGTYEVRGDQVTSKNSHRGT 180
           F+VVD  + +NAILGR W+H MKAVPSTY+Q I+FP+  G   V G Q +S+  + G+
Sbjct: 141 FLVVDKKAPFNAILGRPWLHVMKAVPSTYHQCIKFPSYKGIAVVYGSQRSSRKCYMGS 198


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 26/49 (53%), Positives = 37/49 (75%)
 Frame = +1

Query: 4   RFMVVDSPSQYNAILGRRWIHEMKAVPSTYYQVIRFPTPTGTYEVRGDQ 150
           +F+VVD P+ YN ILG  WIH+M+A+PS+Y+Q I+ PT  G   +RG+Q
Sbjct: 423 KFVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCIKIPTSIGIETIRGNQ 471


>gb|AAC62796.1| contains similarity to reverse transcriptase (Pfam: PF00078 rvt,
           E=4.3e-08) [Arabidopsis thaliana]
           gi|7267135|emb|CAB80803.1| AT4g03800 [Arabidopsis
           thaliana]
          Length = 637

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 28/54 (51%), Positives = 36/54 (66%)
 Frame = +1

Query: 7   FMVVDSPSQYNAILGRRWIHEMKAVPSTYYQVIRFPTPTGTYEVRGDQVTSKNS 168
           F+V D P+ YN ILG  WI +MKAVPSTY+Q ++FPT  G   + GD   S+ S
Sbjct: 265 FVVFDKPATYNIILGTPWIFQMKAVPSTYHQWLKFPTSNGVETIWGDLEGSRTS 318