BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033410
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADO33490.1| hypothetical chloroplast RF21 [Smilax china] gi|3...    86   3e-19
gb|AEK78130.1| hypothetical chloroplast RF2 [Tasmannia lanceolata]     85   5e-19
ref|YP_784430.1| hypothetical protein RF2 [Drimys granadensis] g...    85   5e-19
ref|YP_740694.1| hypothetical chloroplast RF2 [Nandina domestica...    87   5e-19
gb|ADD30885.1| putative RF2 protein [Meliosma aff. cuneifolia Mo...    85   5e-19

>gb|ADO33490.1| hypothetical chloroplast RF21 [Smilax china]
           gi|308742655|gb|ADO33506.1| hypothetical chloroplast
           RF21 [Smilax china]
          Length = 2282

 Score = 85.9 bits (211), Expect(2) = 3e-19
 Identities = 47/78 (60%), Positives = 53/78 (67%)
 Frame = -3

Query: 315 LANMQYDSTRSIFVKVTDSSQLKGSSDQSRDHFDSISNEDSEYHVTSTILLMSIDLCTLP 136
           L+N+QYDSTRSIFV+VTDSSQLKGSSDQSRDHFDSI NEDSEYH         ID   + 
Sbjct: 368 LSNIQYDSTRSIFVQVTDSSQLKGSSDQSRDHFDSIRNEDSEYHTL-------IDQREIQ 420

Query: 135 DELGIDPNNIAWGVSVEQ 82
             L +   +I W  S  Q
Sbjct: 421 QLLKVKERSILWDPSFLQ 438



 Score = 33.9 bits (76), Expect(2) = 3e-19
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -2

Query: 352 LDNVWLVNKDRIFSK 308
           LDNVWLVNKDR FSK
Sbjct: 349 LDNVWLVNKDRFFSK 363


>gb|AEK78130.1| hypothetical chloroplast RF2 [Tasmannia lanceolata]
          Length = 2307

 Score = 85.1 bits (209), Expect(2) = 5e-19
 Identities = 40/43 (93%), Positives = 43/43 (100%)
 Frame = -3

Query: 312 ANMQYDSTRSIFVKVTDSSQLKGSSDQSRDHFDSISNEDSEYH 184
           +N+QYDSTRSIFV+VTDSSQLKGSSDQSRDHFDSISNEDSEYH
Sbjct: 378 SNIQYDSTRSIFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYH 420



 Score = 33.9 bits (76), Expect(2) = 5e-19
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -2

Query: 352 LDNVWLVNKDRIFSK 308
           LDNVWLVNKDR FSK
Sbjct: 358 LDNVWLVNKDRFFSK 372


>ref|YP_784430.1| hypothetical protein RF2 [Drimys granadensis]
           gi|115604998|ref|YP_784449.1| hypothetical protein RF2
           [Drimys granadensis] gi|122164385|sp|Q06GT4.1|YCF2_DRIGR
           RecName: Full=Protein ycf2 gi|112032705|gb|ABH88340.1|
           hypothetical protein RF2 [Drimys granadensis]
           gi|112032726|gb|ABH88361.1| hypothetical protein RF2
           [Drimys granadensis]
          Length = 2302

 Score = 85.1 bits (209), Expect(2) = 5e-19
 Identities = 40/43 (93%), Positives = 43/43 (100%)
 Frame = -3

Query: 312 ANMQYDSTRSIFVKVTDSSQLKGSSDQSRDHFDSISNEDSEYH 184
           +N+QYDSTRSIFV+VTDSSQLKGSSDQSRDHFDSISNEDSEYH
Sbjct: 378 SNIQYDSTRSIFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYH 420



 Score = 33.9 bits (76), Expect(2) = 5e-19
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -2

Query: 352 LDNVWLVNKDRIFSK 308
           LDNVWLVNKDR FSK
Sbjct: 358 LDNVWLVNKDRFFSK 372


>ref|YP_740694.1| hypothetical chloroplast RF2 [Nandina domestica]
           gi|114330032|ref|YP_740713.1| hypothetical chloroplast
           RF2 [Nandina domestica]
           gi|122165906|sp|Q09FP8.1|YCF2_NANDO RecName:
           Full=Protein ycf2 gi|114054515|gb|ABI49908.1|
           hypothetical chloroplast RF2 [Nandina domestica]
           gi|114054534|gb|ABI49927.1| hypothetical chloroplast RF2
           [Nandina domestica]
          Length = 2299

 Score = 86.7 bits (213), Expect(2) = 5e-19
 Identities = 41/43 (95%), Positives = 43/43 (100%)
 Frame = -3

Query: 312 ANMQYDSTRSIFVKVTDSSQLKGSSDQSRDHFDSISNEDSEYH 184
           +NMQYDSTRSIFV+VTDSSQLKGSSDQSRDHFDSISNEDSEYH
Sbjct: 381 SNMQYDSTRSIFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYH 423



 Score = 32.3 bits (72), Expect(2) = 5e-19
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 352 LDNVWLVNKDRIFSKYA 302
           LDNVWLVNKDR FS ++
Sbjct: 358 LDNVWLVNKDRFFSFFS 374


>gb|ADD30885.1| putative RF2 protein [Meliosma aff. cuneifolia Moore 333]
           gi|340807022|gb|AEK71639.1| hypothetical chloroplast RF2
           [Meliosma aff. cuneifolia M. J. Moore 333]
          Length = 2298

 Score = 85.1 bits (209), Expect(2) = 5e-19
 Identities = 40/43 (93%), Positives = 43/43 (100%)
 Frame = -3

Query: 312 ANMQYDSTRSIFVKVTDSSQLKGSSDQSRDHFDSISNEDSEYH 184
           +N+QYDSTRSIFV+VTDSSQLKGSSDQSRDHFDSISNEDSEYH
Sbjct: 371 SNIQYDSTRSIFVQVTDSSQLKGSSDQSRDHFDSISNEDSEYH 413



 Score = 33.9 bits (76), Expect(2) = 5e-19
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -2

Query: 352 LDNVWLVNKDRIFSK 308
           LDNVWLVNKDR FSK
Sbjct: 351 LDNVWLVNKDRFFSK 365