BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033402
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 87   2e-15
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    87   2e-15
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    84   9e-15
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    83   2e-14
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    82   4e-14

>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
 Frame = -3

Query: 415 LEPKMHHASWERICHLKDEGGLGITDMYRWNRAAYCGLVFKVASRENNLWVNWVWQQHMK 236
           L PK    +W  +C LK EGGLGI  +   N+ +   L++++ SR+++LWVNWVW   ++
Sbjct: 426 LNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIR 485

Query: 235 NKMF*TMPIP*DC-SWVWRNVLKARKHAVKFSKVRLANGKTTLLWHDPWCERG 80
              F +        SW+W+ +LK R  A    KV + +G +T  W+D W + G
Sbjct: 486 KGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQLG 538


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
 Frame = -3

Query: 391  SWERICHLKDEGGLGITDMYRWNRAAYCGLVFKVASRENNLWVNWVWQQHMKNKMF*TM- 215
            SW  +C  KDEGGLG+  +   N      LV+K+ S  N+LWV WV Q  ++N  F  + 
Sbjct: 861  SWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVK 920

Query: 214  PIP*DCSWVWRNVLKARKHAVKFSKVRLANGKTTLLWHDPWCERG 80
                  SW+W+ +LK R+ A   SKV + NGK T  W+D W + G
Sbjct: 921  QTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLG 965


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
 Frame = -3

Query: 415 LEPKMHHASWERICHLKDEGGLGITDMYRWNRAAYCGLVFKVASRENNLWVNWVWQQHMK 236
           L PK    SW+ IC  K EGGLG+  +   N+ +   L++++ S +++LWV W     +K
Sbjct: 574 LNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLK 633

Query: 235 NKMF*TMPIP*DC-SWVWRNVLKARKHAVKFSKVRLANGKTTLLWHDPWCERG 80
            + F ++       SW+WR +LK R+ A  F K+ + NG  T  W D W E+G
Sbjct: 634 KESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKG 686


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
 Frame = -3

Query: 415  LEPKMHHASWERICHLKDEGGLGITDMYRWNRAAYCGLVFKVASRENNLWVNWVWQQHMK 236
            L PK    +W  +C LK EGGLGI  +   N+ +   L++++ SR+++LWVNWVW   ++
Sbjct: 995  LNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIR 1054

Query: 235  NKMF*TMPIP*DC-SWVWRNVLKARKHAVKFSKVRLANGKTTLLWHDPWCE 86
               F +        SW+W+ +L  R  A    KV + +G +T  W+D W +
Sbjct: 1055 KGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEIKSGSSTSFWYDNWSQ 1105


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 36/104 (34%), Positives = 57/104 (54%)
 Frame = -3

Query: 391 SWERICHLKDEGGLGITDMYRWNRAAYCGLVFKVASRENNLWVNWVWQQHMKNKMF*TMP 212
           +WE +C  K EGGLG+  +   N      L++++ S+ ++LWV W+    +K   F +  
Sbjct: 379 AWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFR 438

Query: 211 IP*DCSWVWRNVLKARKHAVKFSKVRLANGKTTLLWHDPWCERG 80
                SW+W+ +LK R  A  FSKV + NG+T   W+D W  +G
Sbjct: 439 SASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDWSSKG 482