BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033314
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japo...    88   8e-16
gb|EAZ07996.1| hypothetical protein OsI_30258 [Oryza sativa Indi...    88   8e-16
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    87   1e-15
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...    87   1e-15
gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Ja...    86   2e-15

>gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]
          Length = 1256

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 44/100 (44%), Positives = 58/100 (58%)
 Frame = +2

Query: 17  RDLSLFKPCVSDRENEILTAVPTCEDIWNVVKKMGSSKAPGPDSFNGSFYQKCWELIGQD 196
           R  SL KP V+D  NE L    + E+I N + ++G  KAPGPD F G FYQ+ W ++  D
Sbjct: 486 RVTSLIKPKVTDAMNEELCKTVSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDD 545

Query: 197 VTTYVQDFFIQGILNPGLNETHLALIPKIANPDHASKFRP 316
           +   VQ+FF  G +  G+NET + LIPK   P     FRP
Sbjct: 546 IVRAVQEFFSSGTMPSGVNETAIVLIPKTEQPQELKDFRP 585


>gb|EAZ07996.1| hypothetical protein OsI_30258 [Oryza sativa Indica Group]
          Length = 633

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 44/100 (44%), Positives = 58/100 (58%)
 Frame = +2

Query: 17  RDLSLFKPCVSDRENEILTAVPTCEDIWNVVKKMGSSKAPGPDSFNGSFYQKCWELIGQD 196
           R  SL KP V+D  NE L    + E+I N + ++G  KAPGPD F G FYQ+ W ++  D
Sbjct: 486 RVTSLIKPKVTDAMNEELCKTVSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDD 545

Query: 197 VTTYVQDFFIQGILNPGLNETHLALIPKIANPDHASKFRP 316
           +   VQ+FF  G +  G+NET + LIPK   P     FRP
Sbjct: 546 IVRAVQEFFSSGTMPSGVNETAIVLIPKTEQPQELKDFRP 585


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 39/99 (39%), Positives = 60/99 (60%)
 Frame = +2

Query: 20   DLSLFKPCVSDRENEILTAVPTCEDIWNVVKKMGSSKAPGPDSFNGSFYQKCWELIGQDV 199
            D + FKP V+++ N+ LT   +  +I+N +  +G  KAPGPD     FY+ CWE++G DV
Sbjct: 790  DFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDV 849

Query: 200  TTYVQDFFIQGILNPGLNETHLALIPKIANPDHASKFRP 316
               V+ FF    +   +N T++ +IPKI NP+  S +RP
Sbjct: 850  IKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRP 888


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 39/99 (39%), Positives = 60/99 (60%)
 Frame = +2

Query: 20   DLSLFKPCVSDRENEILTAVPTCEDIWNVVKKMGSSKAPGPDSFNGSFYQKCWELIGQDV 199
            D + FKP V+++ N+ LT   +  +I+N +  +G  KAPGPD     FY+ CWE++G DV
Sbjct: 770  DFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDV 829

Query: 200  TTYVQDFFIQGILNPGLNETHLALIPKIANPDHASKFRP 316
               V+ FF    +   +N T++ +IPKI NP+  S +RP
Sbjct: 830  IKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRP 868


>gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1888

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 44/100 (44%), Positives = 58/100 (58%)
 Frame = +2

Query: 17   RDLSLFKPCVSDRENEILTAVPTCEDIWNVVKKMGSSKAPGPDSFNGSFYQKCWELIGQD 196
            R  SL KP V+D  NE L    + E+I N + ++G  KAPGPD F G FYQ+ W ++  D
Sbjct: 978  RVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDD 1037

Query: 197  VTTYVQDFFIQGILNPGLNETHLALIPKIANPDHASKFRP 316
            +   VQ+FF  G +  G+NET + LIPK   P     FRP
Sbjct: 1038 IVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKDFRP 1077