BLASTX nr result

ID: Coptis21_contig00033270 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033270
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319641.1| predicted protein [Populus trichocarpa] gi|2...    64   2e-08
ref|XP_002279923.1| PREDICTED: uncharacterized protein LOC100267...    56   3e-06

>ref|XP_002319641.1| predicted protein [Populus trichocarpa] gi|222858017|gb|EEE95564.1|
            predicted protein [Populus trichocarpa]
          Length = 1740

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 47/125 (37%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
 Frame = +3

Query: 6    APPYPAQXXXXXXXXXXPVTNFGSVQMNYQKIKGSFGGP-----QLSNSLYPANNLKGFT 170
            AP +P Q          P ++FGSV  N   IK   G P       + SL P+NNLKG  
Sbjct: 665  APSFPLQNVTSFNAS--PASHFGSVPTNLHTIKA--GTPPNVASHYNGSLCPSNNLKGPV 720

Query: 171  XXXXXXXXXXXXXXXXXXXXXXXXXXDQDLSSLRSTHAVEAG--SAMDEDQVQLLNESPK 344
                                      DQDLSSLRS H VE G  SAMD+D ++LLN++ K
Sbjct: 721  HSSSFSSLSSGLGRTTAVKILSASKSDQDLSSLRSQHLVEVGTNSAMDDDHLRLLNDASK 780

Query: 345  DVVSG 359
            D +SG
Sbjct: 781  DALSG 785


>ref|XP_002279923.1| PREDICTED: uncharacterized protein LOC100267561 [Vitis vinifera]
          Length = 1758

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
 Frame = +3

Query: 57   PVTNFGSVQMNYQKIKGSFGGPQLS----NSLYPANNLKGFTXXXXXXXXXXXXXXXXXX 224
            P ++FG+  MN   +K     P ++     SLY + N+KG                    
Sbjct: 684  PGSHFGAGPMNLPGMKAGASSPNVAPHYGGSLYSSGNMKGSMQSSSVSLQSSAPVRSAAG 743

Query: 225  XXXXXXXXDQDLSSLRSTHAVEAGSA--MDEDQVQLLNESPKDVVSG 359
                    DQDL+SLRS H++E GS   MDED ++LL++S K+ VSG
Sbjct: 744  KKLSASKSDQDLASLRSPHSLEIGSGTTMDEDHLRLLSDSSKEAVSG 790


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