BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033252
         (631 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34757.3| unnamed protein product [Vitis vinifera]              167   2e-39
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   167   2e-39
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   150   2e-34
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   142   5e-32
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   140   1e-31

>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  167 bits (422), Expect = 2e-39
 Identities = 89/203 (43%), Positives = 127/203 (62%), Gaps = 10/203 (4%)
 Frame = -3

Query: 581 MDGDVVE-QQVPSALVTHLKFGLLTAADIEKLSVLPVNVGTDITNAKLGLPNEASECSTC 405
           MD D +E QQVPS L+  +KF + T  D+EK+SV+ ++   +IT+ KLG+PN + +CSTC
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 404 GATSAKDCDGHLGMLTLPKDICHPYNLSVIVKILNGICPSCKSNKKESRNKGSGRKPKMS 225
           GA   K C+GH G++  P  I HPY L+ +V+ILN ICP CKS ++       G+  K+ 
Sbjct: 61  GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQ-------GQWVKVR 113

Query: 224 NIASRQPIGCKYCAESSKKWYPQVKFKVSSRNSSGEIGSAIAVEVKVKL---------ND 72
            + S+   GCKYCA +S  WYP +KFKVSS++   +  +AI VE+  KL           
Sbjct: 114 RLRSK---GCKYCAANSNDWYPTMKFKVSSKDLFRK--TAIIVEMNEKLPKKLQKKSFRP 168

Query: 71  ILPDGFWNFIEEDPDEEEISLNP 3
           +LP  +W+FI +DP +EE  LNP
Sbjct: 169 VLPLDYWDFIPKDPQQEENCLNP 191


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  167 bits (422), Expect = 2e-39
 Identities = 89/203 (43%), Positives = 125/203 (61%), Gaps = 10/203 (4%)
 Frame = -3

Query: 581 MDGDVVE-QQVPSALVTHLKFGLLTAADIEKLSVLPVNVGTDITNAKLGLPNEASECSTC 405
           MD D +E QQVPS L+  +KF + T  D+EK+SV+ ++   +IT+ KLG+PN + +CSTC
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 404 GATSAKDCDGHLGMLTLPKDICHPYNLSVIVKILNGICPSCKSNKKESRNKGSGRKPKMS 225
           GA   K C+GH G++  P  I HPY L+ +V+ILN ICP CKS ++    KG+      S
Sbjct: 61  GAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGAD-----S 115

Query: 224 NIASRQPIGCKYCAESSKKWYPQVKFKVSSRNSSGEIGSAIAVEVKVKL---------ND 72
                +  GCKYCA +S  WYP +KFKVSS++   +  +AI VE+  KL           
Sbjct: 116 GSRRLRSKGCKYCAANSNDWYPTMKFKVSSKDLFRK--TAIIVEMNEKLPKKLQKKSFRP 173

Query: 71  ILPDGFWNFIEEDPDEEEISLNP 3
           +LP  +W+FI +DP +EE  LNP
Sbjct: 174 VLPLDYWDFIPKDPQQEENCLNP 196


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
           subunit 1-like [Vitis vinifera]
          Length = 1560

 Score =  150 bits (378), Expect = 2e-34
 Identities = 89/236 (37%), Positives = 125/236 (52%), Gaps = 43/236 (18%)
 Frame = -3

Query: 581 MDGDVVE-QQVPSALVTHLKFGLLTAADIEKLSVLPVNVGTDITNAKLGLPNEASECSTC 405
           MD D +E QQVPS L+  +KF + T  D+EK+SV+ ++   +IT+ KLG+PN + +CSTC
Sbjct: 1   MDNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTC 60

Query: 404 GATSAKDCDG---------------------------------HLGMLTLPKDICHPYNL 324
           GA   K C+G                                 H G++  P  I HPY L
Sbjct: 61  GAKDTKKCEGAVRQVIQKLYLLMISCYLYFLEYAKLXLFIFLGHFGVIKFPFTILHPYFL 120

Query: 323 SVIVKILNGICPSCKSNKKESRNKGSGRKPKMSNIASRQPIGCKYCAESSKKWYPQVKFK 144
           + +V+ILN ICP CKS ++    KG+      S     +  GCKYCA +S  WYP +KFK
Sbjct: 121 TEVVQILNKICPGCKSTRQGQWVKGAD-----SGSRRLRSKGCKYCAANSNDWYPTMKFK 175

Query: 143 VSSRNSSGEIGSAIAVEVKVKL---------NDILPDGFWNFIEEDPDEEEISLNP 3
           VSS++   +  +AI VE+  KL           +LP  +W+FI +DP +EE  LNP
Sbjct: 176 VSSKDLFRK--TAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNP 229


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 1517

 Score =  142 bits (358), Expect = 5e-32
 Identities = 82/221 (37%), Positives = 115/221 (52%), Gaps = 35/221 (15%)
 Frame = -3

Query: 563 EQQVPSALVTHLKFGLLTAADIEKLSVLPVNVGTDITNAKLGLPNEASECSTCGATSAKD 384
           EQQVPSAL+T + FG+LT A+ EKLSVL ++  +++T+ KLGLPN +S+CSTCG+   K 
Sbjct: 8   EQQVPSALITGMAFGVLTEAETEKLSVLNIDAVSEVTDPKLGLPNPSSQCSTCGSRDLKS 67

Query: 383 CDG-----------------------------HLGMLTLPKDICHPYNLSVIVKILNGIC 291
           C+G                             H G++  P  I HPY LS +V+ILN IC
Sbjct: 68  CEGIVDVDLNSADRLASIATGDCANILLSLSGHFGVINFPYTIVHPYFLSEVVQILNKIC 127

Query: 290 PSCKSNKKESRNKGSGRKPKMSNIASRQPIGCKYCAESSKKWYPQVKFKVSSRN------ 129
           P CKS +         +  ++    + Q  GCKYCA +S  WYP +KFKVSS+       
Sbjct: 128 PGCKSIR-------LAKATELITKENPQRKGCKYCAGNSLGWYPPMKFKVSSKEIFRKTA 180

Query: 128 SSGEIGSAIAVEVKVKLNDILPDGFWNFIEEDPDEEEISLN 6
              EI   ++ + +     IL   +W+   +D  EEE   N
Sbjct: 181 IIAEIRETLSKKPQKGFKKILAADYWDIFPKDEQEEEEETN 221


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score =  140 bits (354), Expect = 1e-31
 Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 9/196 (4%)
 Frame = -3

Query: 563 EQQVPSALVTHLKFGLLTAADIEKLSVLPVNVGTDITNAKLGLPNEASECSTCGATSAKD 384
           E  +PS L+T + F +    DIE ++V+ V+   ++++ KLGLPN + +C+TCGA+S K 
Sbjct: 8   ELPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQCTTCGASSLKF 67

Query: 383 CDGHLGMLTLPKDICHPYNLSVIVKILNGICPSCKSNKKESRNKGSGRKPKMSNIASRQP 204
           C+GH G++  P  I HPY LS + ++LN +CP CKS ++E   K        +     +P
Sbjct: 68  CEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPTSDYN-----RP 122

Query: 203 IGCKYCAESSKKWYPQVKFKVSSRNSSGEIGSAIAVEVKVKLNDI---------LPDGFW 51
            GC+YC  S K WYP ++FK+S+ +   +  S I VEVK  ++           LP  +W
Sbjct: 123 KGCRYCFGSLKDWYPPMRFKLSTTDMFKK--SMIMVEVKENMSKKYQKRVAKGGLPSDYW 180

Query: 50  NFIEEDPDEEEISLNP 3
           +FI +D  +EE    P
Sbjct: 181 DFIPKDEQQEESYCRP 196