BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033208
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002894506.1| CPN60B [Arabidopsis lyrata subsp. lyrata] gi...    60   2e-07
dbj|BAH20275.1| AT1G55490 [Arabidopsis thaliana]                       60   2e-07
ref|NP_175945.1| RuBisCO large subunit-binding protein subunit b...    60   2e-07
ref|XP_004159350.1| PREDICTED: LOW QUALITY PROTEIN: ruBisCO larg...    59   4e-07
ref|XP_004144069.1| PREDICTED: ruBisCO large subunit-binding pro...    59   4e-07

>ref|XP_002894506.1| CPN60B [Arabidopsis lyrata subsp. lyrata]
           gi|297340348|gb|EFH70765.1| CPN60B [Arabidopsis lyrata
           subsp. lyrata]
          Length = 600

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +3

Query: 3   CVEHASSVAKTFLMSDLVVVDVKDSEPTPMRKPMQSSGVG 122
           C+EHA+SVAKTFLMSD VVV++K+ EP P+  PM +SG G
Sbjct: 560 CLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYG 599


>dbj|BAH20275.1| AT1G55490 [Arabidopsis thaliana]
          Length = 234

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +3

Query: 3   CVEHASSVAKTFLMSDLVVVDVKDSEPTPMRKPMQSSGVG 122
           C+EHA+SVAKTFLMSD VVV++K+ EP P+  PM +SG G
Sbjct: 194 CLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYG 233


>ref|NP_175945.1| RuBisCO large subunit-binding protein subunit beta [Arabidopsis
           thaliana] gi|30695947|ref|NP_849811.1| RuBisCO large
           subunit-binding protein subunit beta [Arabidopsis
           thaliana] gi|27735252|sp|P21240.3|CPNB1_ARATH RecName:
           Full=Chaperonin 60 subunit beta 1, chloroplastic;
           Short=CPN-60 beta 1; AltName: Full=60 kDa chaperonin
           subunit beta 1; AltName: Full=RuBisCO large
           subunit-binding protein subunit beta, chloroplastic;
           Flags: Precursor gi|14423416|gb|AAK62390.1|AF386945_1
           Rubisco subunit binding-protein beta subunit
           [Arabidopsis thaliana] gi|4204266|gb|AAD10647.1| Rubisco
           subunit binding-protein beta subunit [Arabidopsis
           thaliana] gi|20148345|gb|AAM10063.1| Rubisco subunit
           binding-protein beta subunit [Arabidopsis thaliana]
           gi|222423239|dbj|BAH19596.1| AT1G55490 [Arabidopsis
           thaliana] gi|332195130|gb|AEE33251.1| RuBisCO large
           subunit-binding protein subunit beta [Arabidopsis
           thaliana] gi|332195131|gb|AEE33252.1| RuBisCO large
           subunit-binding protein subunit beta [Arabidopsis
           thaliana]
          Length = 600

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +3

Query: 3   CVEHASSVAKTFLMSDLVVVDVKDSEPTPMRKPMQSSGVG 122
           C+EHA+SVAKTFLMSD VVV++K+ EP P+  PM +SG G
Sbjct: 560 CLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYG 599


>ref|XP_004159350.1| PREDICTED: LOW QUALITY PROTEIN: ruBisCO large subunit-binding
           protein subunit beta, chloroplastic-like [Cucumis
           sativus]
          Length = 608

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/40 (65%), Positives = 32/40 (80%)
 Frame = +3

Query: 3   CVEHASSVAKTFLMSDLVVVDVKDSEPTPMRKPMQSSGVG 122
           C+EHA+SVAKTFLMSD VVV++K+ EP P   PM +SG G
Sbjct: 568 CLEHAASVAKTFLMSDCVVVEIKEPEPVPAGNPMDNSGYG 607


>ref|XP_004144069.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta,
           chloroplastic-like [Cucumis sativus]
          Length = 608

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 26/40 (65%), Positives = 32/40 (80%)
 Frame = +3

Query: 3   CVEHASSVAKTFLMSDLVVVDVKDSEPTPMRKPMQSSGVG 122
           C+EHA+SVAKTFLMSD VVV++K+ EP P   PM +SG G
Sbjct: 568 CLEHAASVAKTFLMSDCVVVEIKEPEPVPAGNPMDNSGYG 607