BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033164
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi...   155   2e-36
emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]   153   1e-35
ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containi...   148   5e-34
ref|XP_003612041.1| Pentatricopeptide repeat-containing protein ...   145   3e-33
ref|XP_002521565.1| pentatricopeptide repeat-containing protein,...   145   4e-33

>ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  155 bits (393), Expect = 2e-36
 Identities = 70/119 (58%), Positives = 93/119 (78%)
 Frame = +2

Query: 2   KNPEGAILLYNQMLHNSIQHTEYTFPFLLKACAKLARLEETEQIHSHIVKTGFGSDVYSA 181
           K PE A+LLY+ ML++S+ H  YTFPFLLKAC+ ++ LEET+QIH+HI+K GFGS++Y+ 
Sbjct: 97  KEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTT 156

Query: 182 NSLLHAYAKSGKLVPARCLFDRIVERDIVSWNSMIDAYVKNKEIEAACRLFNQMPVKNV 358
           NSLL+ Y+KSG +  AR LFD++ +RD VSWNSMID Y K  EIE A  +FN MP +N+
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = +2

Query: 83  LLKACAKLARLEETEQIHSHIVKTGFGSDVYSANSLLH--AYAKSGKLVPARCLFDRIVE 256
           LL+ C+ +   EE  QIH  ++KTG   D   A+ LL   A   SG L  AR +FDRI  
Sbjct: 24  LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 257 RDIVSWNSMIDAYVKNKEIEAACRLFNQM 343
            +   WN+MI  Y  +KE E A  L++ M
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHM 109


>emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  153 bits (387), Expect = 1e-35
 Identities = 69/119 (57%), Positives = 92/119 (77%)
 Frame = +2

Query: 2   KNPEGAILLYNQMLHNSIQHTEYTFPFLLKACAKLARLEETEQIHSHIVKTGFGSDVYSA 181
           K PE A+LLY+ ML++S+ H  YTFPFLLKAC+ ++  EET+QIH+HI+K GFGS++Y+ 
Sbjct: 97  KEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTT 156

Query: 182 NSLLHAYAKSGKLVPARCLFDRIVERDIVSWNSMIDAYVKNKEIEAACRLFNQMPVKNV 358
           NSLL+ Y+KSG +  AR LFD++ +RD VSWNSMID Y K  EIE A  +FN MP +N+
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = +2

Query: 83  LLKACAKLARLEETEQIHSHIVKTGFGSDVYSANSLLH--AYAKSGKLVPARCLFDRIVE 256
           LL+ C+ +   EE  QIH  ++KTG   D   A+ LL   A   SG L  AR +FDRI  
Sbjct: 24  LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 257 RDIVSWNSMIDAYVKNKEIEAACRLFNQM 343
            +   WN+MI  Y  +KE E A  L++ M
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHM 109


>ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  148 bits (373), Expect = 5e-34
 Identities = 68/118 (57%), Positives = 88/118 (74%)
 Frame = +2

Query: 5   NPEGAILLYNQMLHNSIQHTEYTFPFLLKACAKLARLEETEQIHSHIVKTGFGSDVYSAN 184
           +PE A+LLY+QMLHNS+ H  YTFPFLLKAC+ L+  EET+QIH+HI+K GFG +VY+ N
Sbjct: 90  DPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATN 149

Query: 185 SLLHAYAKSGKLVPARCLFDRIVERDIVSWNSMIDAYVKNKEIEAACRLFNQMPVKNV 358
           SLL  YA SG +  A  LF+++  RDIVSWN MID Y+K   ++ A ++F  MP KNV
Sbjct: 150 SLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNV 207


>ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513376|gb|AES94999.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  145 bits (367), Expect = 3e-33
 Identities = 70/118 (59%), Positives = 86/118 (72%)
 Frame = +2

Query: 5   NPEGAILLYNQMLHNSIQHTEYTFPFLLKACAKLARLEETEQIHSHIVKTGFGSDVYSAN 184
           +PE A+LLY+QMLH+SI H  YTFPFLLKAC+ L+ L ET QIH  I+K GFGS+VY+ N
Sbjct: 91  DPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATN 150

Query: 185 SLLHAYAKSGKLVPARCLFDRIVERDIVSWNSMIDAYVKNKEIEAACRLFNQMPVKNV 358
           SLL  YA SG +  A  LFD +  RDIVSWN+MID Y+K   +E A ++F  MP KNV
Sbjct: 151 SLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNV 208


>ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539243|gb|EEF40836.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 338

 Score =  145 bits (365), Expect = 4e-33
 Identities = 69/116 (59%), Positives = 86/116 (74%)
 Frame = +2

Query: 8   PEGAILLYNQMLHNSIQHTEYTFPFLLKACAKLARLEETEQIHSHIVKTGFGSDVYSANS 187
           PE A++LY+QML +S+ H  YTFPFLLKAC+ L+ +E+ +Q+H+ I+K GFGSDVY+ NS
Sbjct: 92  PEEALILYHQMLCHSVPHNGYTFPFLLKACSSLSAIEKAQQVHAQIIKLGFGSDVYTTNS 151

Query: 188 LLHAYAKSGKLVPARCLFDRIVERDIVSWNSMIDAYVKNKEIEAACRLFNQMPVKN 355
           LLHAYA SG +  AR +FDRI   D VSWNS+ID YVK  E E A  LF  MP KN
Sbjct: 152 LLHAYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGETETAYELFKDMPEKN 207