BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033082
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast ...   306   1e-81
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   300   8e-80
ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|2...   298   4e-79
ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|2...   297   5e-79
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   297   5e-79

>ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
            [Ricinus communis] gi|223532193|gb|EEF33998.1|
            DNA-directed RNA polymerase 3B, chloroplast precursor,
            putative [Ricinus communis]
          Length = 1000

 Score =  306 bits (783), Expect = 1e-81
 Identities = 147/164 (89%), Positives = 157/164 (95%)
 Frame = +1

Query: 1    VMTSVYGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMG 180
            VMTSVYGVTYVGAREQIKRRLEE+G+ITDDRLLFSASCY AKVTLTALGE+FQAAR IMG
Sbjct: 747  VMTSVYGVTYVGAREQIKRRLEEKGQITDDRLLFSASCYTAKVTLTALGELFQAARDIMG 806

Query: 181  WLGDCAKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQR 360
            WLGDCAK+IASE+QPV+W TPLGLPVVQPY KSERHLIRTSLQVLALQREG SV++++QR
Sbjct: 807  WLGDCAKVIASEDQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGSSVKVRKQR 866

Query: 361  TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV 492
            TAFPPNFVHSLDGSHMMMTAVACRDA L FAGVHDSFWTHACDV
Sbjct: 867  TAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHACDV 910


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score =  300 bits (768), Expect = 8e-80
 Identities = 144/164 (87%), Positives = 155/164 (94%)
 Frame = +1

Query: 1    VMTSVYGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMG 180
            VMTSVYGVTYVGAREQIKRRLEE+G I DDRLLF+ASCYAAKVTL ALGE+FQAAR  M 
Sbjct: 756  VMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMT 815

Query: 181  WLGDCAKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQR 360
            WLGDCAK+IASENQPVRW TPLGLPVVQPY K++RH+IRTSLQVLALQREGD+VE+++QR
Sbjct: 816  WLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQR 875

Query: 361  TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV 492
            TAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDV
Sbjct: 876  TAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDV 919


>ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1|
            predicted protein [Populus trichocarpa]
          Length = 982

 Score =  298 bits (762), Expect = 4e-79
 Identities = 143/163 (87%), Positives = 155/163 (95%)
 Frame = +1

Query: 1    VMTSVYGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMG 180
            VMTSVYGVTYVGAREQIKRRLEE+G ITDDR+LFSA+CYAAKVTLTALGE+FQAAR IMG
Sbjct: 761  VMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMG 820

Query: 181  WLGDCAKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQR 360
            WLGDCAK+IASE+QPVRW TPLGLPVVQPY K++RHLIRTSLQVLALQREG SV++++QR
Sbjct: 821  WLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQR 880

Query: 361  TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACD 489
            TAFPPNFVHSLDGSHMMMTAVACRDA L FAGVHDSFWTHA D
Sbjct: 881  TAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARD 923


>ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1|
            predicted protein [Populus trichocarpa]
          Length = 882

 Score =  297 bits (761), Expect = 5e-79
 Identities = 143/164 (87%), Positives = 155/164 (94%)
 Frame = +1

Query: 1    VMTSVYGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMG 180
            VMTSVYGVTYVGAREQIKRRLEE+G ITDDRLLFSA+CY AKVTLTALGE+FQAAR IM 
Sbjct: 661  VMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMS 720

Query: 181  WLGDCAKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQR 360
            WLGDCAKIIASE+QPV+W TPLGLPVVQPY K+ERHLI+TSLQ+LALQREG SV++++QR
Sbjct: 721  WLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQR 780

Query: 361  TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV 492
            TAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHA DV
Sbjct: 781  TAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDV 824


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score =  297 bits (761), Expect = 5e-79
 Identities = 142/164 (86%), Positives = 154/164 (93%)
 Frame = +1

Query: 1    VMTSVYGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMG 180
            VMTSVYGVTYVGAREQIKRRLEE+G I DDRLLF+ASCYAAKVTL ALGE+FQAAR  M 
Sbjct: 756  VMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMT 815

Query: 181  WLGDCAKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQR 360
            WLGDCAK+IA ENQPVRW TPLGLPVVQPY K++RH+IRTSLQ+LALQREGD+VE+++QR
Sbjct: 816  WLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQR 875

Query: 361  TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV 492
            TAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDV
Sbjct: 876  TAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDV 919