BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032343
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containi...   180   9e-44
ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containi...   180   9e-44
ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containi...   176   1e-42
ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containi...   167   6e-40
ref|XP_002329527.1| predicted protein [Populus trichocarpa] gi|2...   164   7e-39

>ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  180 bits (457), Expect = 9e-44
 Identities = 85/155 (54%), Positives = 106/155 (68%), Gaps = 35/155 (22%)
 Frame = +3

Query: 6   IKNVISWTTIVSGYVNCGKLHEARELFDRSPTKDVVLWTTMING---------------- 137
           +KNVI WT+++SGY+NCG L EAR+LFD+SP +DVVLWT MING                
Sbjct: 361 MKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFRE 420

Query: 138 -------------------CAQLGALEQGRWIHGYIEDNNVVMDVVVSTALIDMYAKCGC 260
                              CAQLGALEQG+WIHGY+++N + MDVVV TALI+MY+KCGC
Sbjct: 421 MQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGC 480

Query: 261 IDKSLEIFRRTKKKDTASWTALICGFAMNGQTNRA 365
           +DKSLEIF   + KDTASWT++ICG AMNG+T+ A
Sbjct: 481 VDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEA 515



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
 Frame = +3

Query: 9   KNVISWTTIVSGYVNCGKLHEARELF-------DRSPTKDVVLWTTMINGCAQLGALEQG 167
           ++ +SW  ++SGYV C +  +A   F       +  P +  V+ T  ++ C  L  LE G
Sbjct: 261 RDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVST--LSACTALKNLELG 318

Query: 168 RWIHGYIEDNNVVMDVVVSTALIDMYAKCGCIDKSLEIFRRTKKKDTASWTALICGFAMN 347
             IH Y+    +     +  AL+DMYAKCGC++ +  IF     K+   WT++I G+   
Sbjct: 319 DEIHNYVR-KELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINC 377

Query: 348 GQTNRA 365
           G    A
Sbjct: 378 GDLREA 383


>ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  180 bits (457), Expect = 9e-44
 Identities = 85/155 (54%), Positives = 106/155 (68%), Gaps = 35/155 (22%)
 Frame = +3

Query: 6   IKNVISWTTIVSGYVNCGKLHEARELFDRSPTKDVVLWTTMING---------------- 137
           +KNVI WT+++SGY+NCG L EAR+LFD+SP +DVVLWT MING                
Sbjct: 407 MKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFRE 466

Query: 138 -------------------CAQLGALEQGRWIHGYIEDNNVVMDVVVSTALIDMYAKCGC 260
                              CAQLGALEQG+WIHGY+++N + MDVVV TALI+MY+KCGC
Sbjct: 467 MQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGC 526

Query: 261 IDKSLEIFRRTKKKDTASWTALICGFAMNGQTNRA 365
           +DKSLEIF   + KDTASWT++ICG AMNG+T+ A
Sbjct: 527 VDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEA 561



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
 Frame = +3

Query: 9   KNVISWTTIVSGYVNCGKLHEARELF-------DRSPTKDVVLWTTMINGCAQLGALEQG 167
           ++ +SW  ++SGYV C +  +A   F       +  P +  V+ T  ++ C  L  LE G
Sbjct: 307 RDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVST--LSACTALKNLELG 364

Query: 168 RWIHGYIEDNNVVMDVVVSTALIDMYAKCGCIDKSLEIFRRTKKKDTASWTALICGFAMN 347
             IH Y+    +     +  AL+DMYAKCGC++ +  IF     K+   WT++I G+   
Sbjct: 365 DEIHNYVR-KELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINC 423

Query: 348 GQTNRA 365
           G    A
Sbjct: 424 GDLREA 429


>ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  176 bits (447), Expect = 1e-42
 Identities = 87/155 (56%), Positives = 106/155 (68%), Gaps = 35/155 (22%)
 Frame = +3

Query: 6   IKNVISWTTIVSGYVNCGKLHEARELFDRSPTKDVVLWTTMING---------------- 137
           IK VI WT++VSGYVNCG+L EARELF+RSP +DVVLWT MING                
Sbjct: 296 IKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFRE 355

Query: 138 -------------------CAQLGALEQGRWIHGYIEDNNVVMDVVVSTALIDMYAKCGC 260
                              CAQLG LEQG+WIHGYI++N +++D VV TALI+MYAKCG 
Sbjct: 356 MQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGF 415

Query: 261 IDKSLEIFRRTKKKDTASWTALICGFAMNGQTNRA 365
           I+KSLEIF   K+KDTASWT++ICG AMNG+T++A
Sbjct: 416 IEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKA 450



 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
 Frame = +3

Query: 9   KNVISWTTIVSGYVNCGKLHEARELFDRS-------PTKDVVLWTTMINGCAQLGALEQG 167
           ++V+SW  ++SGYV C +  +A ++F R        P +  V+ T  ++ C  L  LE G
Sbjct: 196 RDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVST--LSACIALKMLELG 253

Query: 168 RWIHGYIEDNNVVMDVVVSTALIDMYAKCGCIDKSLEIFRRTKKKDTASWTALICGFAMN 347
           + IH Y+ +  +   + +  AL+DMY KCG +  + EIF     K    WT+++ G+   
Sbjct: 254 KEIHRYVREQ-LGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNC 312

Query: 348 GQTNRA 365
           GQ + A
Sbjct: 313 GQLDEA 318


>ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  167 bits (424), Expect = 6e-40
 Identities = 83/155 (53%), Positives = 102/155 (65%), Gaps = 35/155 (22%)
 Frame = +3

Query: 6   IKNVISWTTIVSGYVNCGKLHEARELFDRSPTKDVVLWTTMING---------------- 137
           +KNV  WT++V+GYV CG+L +AR LF+RSP++DVVLWT MING                
Sbjct: 272 VKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGE 331

Query: 138 -------------------CAQLGALEQGRWIHGYIEDNNVVMDVVVSTALIDMYAKCGC 260
                              CAQLGALEQG+WIH YI++N + MD VVSTALI+MYAKCGC
Sbjct: 332 MQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGC 391

Query: 261 IDKSLEIFRRTKKKDTASWTALICGFAMNGQTNRA 365
           I+KSLEIF   K  DT SWT++ICG AMNG+T+ A
Sbjct: 392 IEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEA 426



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
 Frame = +3

Query: 9   KNVISWTTIVSGYVNCGKLHEARELFDR-------SPTKDVVLWTTMINGCAQLGALEQG 167
           ++ +SW  ++SGYV C +  EA +++ R        P +  V+ T  ++ CA L  LE G
Sbjct: 172 RDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVST--LSACAVLRNLELG 229

Query: 168 RWIHGYIEDNNVVMDVVVSTALIDMYAKCGCIDKSLEIFRRTKKKDTASWTALICGFAMN 347
           + IH YI  N + +  ++  AL+DMY KCGC+  + EIF     K+   WT+++ G+ + 
Sbjct: 230 KEIHDYIA-NELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVIC 288

Query: 348 GQTNRA 365
           GQ ++A
Sbjct: 289 GQLDQA 294



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
 Frame = +3

Query: 24  WTTIVSGYVNCGKLHEARELF----DRSPTKDVVLWTTMINGCAQLGALEQGRWIHGYIE 191
           +  ++  +V  G L  A  LF    +R    D   +  ++ G   +G + +G  IH ++ 
Sbjct: 76  YNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVV 135

Query: 192 DNNVVMDVVVSTALIDMYAKCGCIDKSLEIFRRTKKKDTASWTALICGF 338
              +  D  V  +L+DMYA+ G ++   ++F    ++D  SW  +I G+
Sbjct: 136 KTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGY 184


>ref|XP_002329527.1| predicted protein [Populus trichocarpa] gi|222870236|gb|EEF07367.1|
           predicted protein [Populus trichocarpa]
          Length = 377

 Score =  164 bits (415), Expect = 7e-39
 Identities = 80/154 (51%), Positives = 103/154 (66%), Gaps = 35/154 (22%)
 Frame = +3

Query: 9   KNVISWTTIVSGYVNCGKLHEARELFDRSPTKDVVLWTTMING----------------- 137
           KNVI WT++VSGYVN G+L +ARELF+RSP KDVVLWT MING                 
Sbjct: 21  KNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEM 80

Query: 138 ------------------CAQLGALEQGRWIHGYIEDNNVVMDVVVSTALIDMYAKCGCI 263
                             CAQ+GALEQG WIHGYI++  + +D VV T+LI+MY+KCGCI
Sbjct: 81  QIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKCGCI 140

Query: 264 DKSLEIFRRTKKKDTASWTALICGFAMNGQTNRA 365
           +K+L IF   ++KDTA+WT++ICG AMNG+T++A
Sbjct: 141 EKALRIFCGLREKDTATWTSIICGLAMNGKTSKA 174