BLASTX nr result

ID: Coptis21_contig00032341 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032341
         (697 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274622.1| PREDICTED: ABC transporter G family member 5...   289   4e-76
emb|CAN65468.1| hypothetical protein VITISV_039927 [Vitis vinifera]   270   2e-70
ref|XP_002309921.1| white-brown-complex ABC transporter family [...   269   3e-70
emb|CAO94661.1| ATP Binding Cassette Transporter (CrWBC1) [Catha...   266   2e-69
ref|XP_002885884.1| abc transporter family protein [Arabidopsis ...   265   7e-69

>ref|XP_002274622.1| PREDICTED: ABC transporter G family member 5 isoform 1 [Vitis
           vinifera]
          Length = 635

 Score =  289 bits (739), Expect = 4e-76
 Identities = 137/180 (76%), Positives = 146/180 (81%)
 Frame = +2

Query: 5   SSYVIANGXXXXXXXXXXXXXXXXXXXXXXGLNPNFMAFMFFVLLIWLIFYTANSVVVCF 184
           SSY IANG                      GLNPNFMAFM F+ LIWLI YTANSVVVCF
Sbjct: 449 SSYAIANGLVYLPFLLILAILFSLPLYLLVGLNPNFMAFMHFLFLIWLILYTANSVVVCF 508

Query: 185 SALVPNFIIGNSLISGVMGSFFLFSGYFISKNGMPKYWVFMHYISLFKYPFEGFLINEFS 364
           SALVPNFI+G S+ISGVMGSFFLFSGYFISKNGMP YW+FMHYISLFKYPFEGFLINEFS
Sbjct: 509 SALVPNFIVGYSVISGVMGSFFLFSGYFISKNGMPDYWIFMHYISLFKYPFEGFLINEFS 568

Query: 365 GAGKCFDYMFGACIVTGEDVLKEAGFGEESRWRNVVIMVCFILFYRFISYVVLRCRCSQK 544
           G GKC DYMFG C+V GEDVL+E G+GEESRWRNVVIMVCFIL YRFISYV+LRCRCSQ+
Sbjct: 569 GPGKCLDYMFGTCVVKGEDVLREEGYGEESRWRNVVIMVCFILLYRFISYVILRCRCSQR 628


>emb|CAN65468.1| hypothetical protein VITISV_039927 [Vitis vinifera]
          Length = 151

 Score =  270 bits (691), Expect = 2e-70
 Identities = 124/144 (86%), Positives = 133/144 (92%)
 Frame = +2

Query: 113 MAFMFFVLLIWLIFYTANSVVVCFSALVPNFIIGNSLISGVMGSFFLFSGYFISKNGMPK 292
           MAFM F+ LIWLI YTANSVVVCFSALVPNFI+G S+ISGVMGSFFLFSGYFISKNGMP 
Sbjct: 1   MAFMHFLFLIWLILYTANSVVVCFSALVPNFIVGYSVISGVMGSFFLFSGYFISKNGMPD 60

Query: 293 YWVFMHYISLFKYPFEGFLINEFSGAGKCFDYMFGACIVTGEDVLKEAGFGEESRWRNVV 472
           YW+FMHYISLFKYPFEGFLINEFSG GKC DYMFG C+V GEDVL+E G+GEESRWRNVV
Sbjct: 61  YWIFMHYISLFKYPFEGFLINEFSGPGKCLDYMFGTCVVKGEDVLREEGYGEESRWRNVV 120

Query: 473 IMVCFILFYRFISYVVLRCRCSQK 544
           IMVCFIL YRFISYV+LRCRCSQ+
Sbjct: 121 IMVCFILLYRFISYVILRCRCSQR 144


>ref|XP_002309921.1| white-brown-complex ABC transporter family [Populus trichocarpa]
           gi|222852824|gb|EEE90371.1| white-brown-complex ABC
           transporter family [Populus trichocarpa]
          Length = 546

 Score =  269 bits (688), Expect = 3e-70
 Identities = 127/176 (72%), Positives = 142/176 (80%)
 Frame = +2

Query: 5   SSYVIANGXXXXXXXXXXXXXXXXXXXXXXGLNPNFMAFMFFVLLIWLIFYTANSVVVCF 184
           SSY IANG                      GLNPNFMAFM F+LLIWLI YTANSVVVCF
Sbjct: 371 SSYAIANGLVYLPFLLILAILFTIPLYWLVGLNPNFMAFMHFLLLIWLILYTANSVVVCF 430

Query: 185 SALVPNFIIGNSLISGVMGSFFLFSGYFISKNGMPKYWVFMHYISLFKYPFEGFLINEFS 364
           SALVPNFI+GNS+ISGVMGSFFLFSGYFISK+GMP YW+FMHYISLFKYPFEGFLINEFS
Sbjct: 431 SALVPNFIVGNSVISGVMGSFFLFSGYFISKHGMPNYWIFMHYISLFKYPFEGFLINEFS 490

Query: 365 GAGKCFDYMFGACIVTGEDVLKEAGFGEESRWRNVVIMVCFILFYRFISYVVLRCR 532
            +GKC +YMFG C+V+ ED+L+E G+GE+ +WRNVVIMVCFIL YRFISYV+LR R
Sbjct: 491 NSGKCLEYMFGKCMVSAEDLLREEGYGEDGKWRNVVIMVCFILVYRFISYVILRLR 546


>emb|CAO94661.1| ATP Binding Cassette Transporter (CrWBC1) [Catharanthus roseus]
          Length = 626

 Score =  266 bits (681), Expect = 2e-69
 Identities = 129/181 (71%), Positives = 144/181 (79%)
 Frame = +2

Query: 5   SSYVIANGXXXXXXXXXXXXXXXXXXXXXXGLNPNFMAFMFFVLLIWLIFYTANSVVVCF 184
           SSY IANG                      GLN NF AFM F++LIWLI YTANSVVVCF
Sbjct: 440 SSYAIANGLVYLPFLLILALLFSTPLYWLAGLNRNFFAFMQFLVLIWLILYTANSVVVCF 499

Query: 185 SALVPNFIIGNSLISGVMGSFFLFSGYFISKNGMPKYWVFMHYISLFKYPFEGFLINEFS 364
           SALVPNFI+GNSLISGVMGSFFLFSGYFISK+G+P YW+FMHYISLFKYPFEGFLINEFS
Sbjct: 500 SALVPNFIVGNSLISGVMGSFFLFSGYFISKHGIPGYWMFMHYISLFKYPFEGFLINEFS 559

Query: 365 GAGKCFDYMFGACIVTGEDVLKEAGFGEESRWRNVVIMVCFILFYRFISYVVLRCRCSQK 544
           G G C + MFG C+V GEDVLKE G+GEESRWRN++IMVC+IL YRFISYV+LR +CSQ+
Sbjct: 560 GYG-CLEIMFGTCVVKGEDVLKEVGYGEESRWRNLIIMVCYILVYRFISYVILRYKCSQR 618

Query: 545 G 547
           G
Sbjct: 619 G 619


>ref|XP_002885884.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297331724|gb|EFH62143.1| abc transporter family
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 649

 Score =  265 bits (677), Expect = 7e-69
 Identities = 125/180 (69%), Positives = 143/180 (79%)
 Frame = +2

Query: 5    SSYVIANGXXXXXXXXXXXXXXXXXXXXXXGLNPNFMAFMFFVLLIWLIFYTANSVVVCF 184
            SSY IANG                      GLNPNFMAF+ F+LLIWLI YTANSVVVCF
Sbjct: 463  SSYAIANGLVYLPFLLILAILFSLPVYWLVGLNPNFMAFLHFLLLIWLILYTANSVVVCF 522

Query: 185  SALVPNFIIGNSLISGVMGSFFLFSGYFISKNGMPKYWVFMHYISLFKYPFEGFLINEFS 364
            SALVPNFI+GNS+ISGVMGSFFLFSGYFIS + +P YW+FMHYISLFKYPFEGFLI+EFS
Sbjct: 523  SALVPNFIVGNSVISGVMGSFFLFSGYFISNHEIPGYWIFMHYISLFKYPFEGFLISEFS 582

Query: 365  GAGKCFDYMFGACIVTGEDVLKEAGFGEESRWRNVVIMVCFILFYRFISYVVLRCRCSQK 544
             + KC +Y FG C+VT ED+LKE  +GEE+RWRNVVIM+CF+L YRFISYV+LRCRCSQ+
Sbjct: 583  KSSKCLEYGFGKCLVTEEDLLKEERYGEENRWRNVVIMLCFVLLYRFISYVILRCRCSQR 642


Top