BLASTX nr result
ID: Coptis21_contig00032297
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00032297
(694 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc... 137 2e-61
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera] 135 6e-59
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc... 120 3e-52
ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transc... 121 3e-46
ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transc... 115 2e-44
>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1 [Vitis vinifera]
gi|296090002|emb|CBI39821.3| unnamed protein product
[Vitis vinifera]
Length = 602
Score = 137 bits (345), Expect(2) = 2e-61
Identities = 70/117 (59%), Positives = 88/117 (75%)
Frame = -2
Query: 588 VYHLTEIEDLQDRHNLRSAPLCIKDLQQYFDSQQANSLRTLGDAEIGTKPIILGLGTQKS 409
+ +TEIEDLQ +L A LCIKD + YFDSQQAN+L+TLGD G+K I L TQ++
Sbjct: 384 ISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEA 443
Query: 408 FGSLKTLISEMKENKFSDPVVRSGTALKVLNGLTQHHSSAKYHIGKSPQESVLDRLP 238
+GSL+ ISE+K SDP+V+ ALKVLNGLTQ+ SS K+H+GK+PQESVLDRLP
Sbjct: 444 YGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLP 500
Score = 125 bits (313), Expect(2) = 2e-61
Identities = 58/73 (79%), Positives = 65/73 (89%)
Frame = -1
Query: 238 ELLHHWASVQELLKHFWSSYPITTTYLSTMVNRFKDAMSEIYPKLQGVKESVQFEFRHQV 59
ELLHHW S+QELL+HFWSSYPITTTYL T +R KDAMS+IYPKLQ +KESVQ +FRHQV
Sbjct: 506 ELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQV 565
Query: 58 SLLVHPMLKALDA 20
SLLV PML+ALDA
Sbjct: 566 SLLVQPMLQALDA 578
>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
Length = 735
Score = 135 bits (341), Expect(2) = 6e-59
Identities = 69/117 (58%), Positives = 88/117 (75%)
Frame = -2
Query: 588 VYHLTEIEDLQDRHNLRSAPLCIKDLQQYFDSQQANSLRTLGDAEIGTKPIILGLGTQKS 409
+ +TEIEDLQ +L A LCIKD + YFDSQQAN+L+TLGD G+K I L +Q++
Sbjct: 427 ISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEA 486
Query: 408 FGSLKTLISEMKENKFSDPVVRSGTALKVLNGLTQHHSSAKYHIGKSPQESVLDRLP 238
+GSL+ ISE+K SDP+V+ ALKVLNGLTQ+ SS K+H+GK+PQESVLDRLP
Sbjct: 487 YGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLP 543
Score = 118 bits (295), Expect(2) = 6e-59
Identities = 54/69 (78%), Positives = 61/69 (88%)
Frame = -1
Query: 238 ELLHHWASVQELLKHFWSSYPITTTYLSTMVNRFKDAMSEIYPKLQGVKESVQFEFRHQV 59
ELLHHW S+QELL+HFWSSYPITTTYL T +R KDAMS+IYPKLQ +KESVQ +FRHQV
Sbjct: 549 ELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQV 608
Query: 58 SLLVHPMLK 32
SLLV PML+
Sbjct: 609 SLLVQPMLQ 617
>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Cucumis sativus]
Length = 729
Score = 120 bits (300), Expect(2) = 3e-52
Identities = 58/118 (49%), Positives = 82/118 (69%)
Frame = -2
Query: 588 VYHLTEIEDLQDRHNLRSAPLCIKDLQQYFDSQQANSLRTLGDAEIGTKPIILGLGTQKS 409
+ +T IEDLQ H+ APLCIKD + YFD+QQAN+++TL D G + L T ++
Sbjct: 511 ISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEA 570
Query: 408 FGSLKTLISEMKENKFSDPVVRSGTALKVLNGLTQHHSSAKYHIGKSPQESVLDRLPN 235
+GSL+ ISE+K + F+ P+++ AL V NGLTQ+ SS KY +GK+PQES+L+ LPN
Sbjct: 571 YGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPN 628
Score = 111 bits (278), Expect(2) = 3e-52
Identities = 52/73 (71%), Positives = 63/73 (86%)
Frame = -1
Query: 238 ELLHHWASVQELLKHFWSSYPITTTYLSTMVNRFKDAMSEIYPKLQGVKESVQFEFRHQV 59
ELLHHW S+QELLKHFWSSYPITT+YL T V+R KDAM++IY +L+ +KE+V +FRHQV
Sbjct: 633 ELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADFRHQV 692
Query: 58 SLLVHPMLKALDA 20
SLLV PM +ALDA
Sbjct: 693 SLLVRPMHQALDA 705
>ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Glycine max]
Length = 604
Score = 121 bits (303), Expect(2) = 3e-46
Identities = 61/116 (52%), Positives = 84/116 (72%)
Frame = -2
Query: 579 LTEIEDLQDRHNLRSAPLCIKDLQQYFDSQQANSLRTLGDAEIGTKPIILGLGTQKSFGS 400
+T IEDLQ + N APLCIKD + YFDSQQAN+++TL D++ G + + LG+++++ S
Sbjct: 390 MTPIEDLQAQDNHPYAPLCIKDPRDYFDSQQANAVKTLDDSQAGMEQMKCSLGSEEAYDS 449
Query: 399 LKTLISEMKENKFSDPVVRSGTALKVLNGLTQHHSSAKYHIGKSPQESVLDRLPNS 232
L+ IS++K DP+ ALKVLNGLT++ +S KYH+GKS QESVLD LPNS
Sbjct: 450 LRASISKIKTTGLRDPLFSPDVALKVLNGLTKNITSTKYHLGKSSQESVLDILPNS 505
Score = 90.5 bits (223), Expect(2) = 3e-46
Identities = 41/76 (53%), Positives = 56/76 (73%)
Frame = -1
Query: 238 ELLHHWASVQELLKHFWSSYPITTTYLSTMVNRFKDAMSEIYPKLQGVKESVQFEFRHQV 59
+LL HW QELL+HFWSSYP++T L + R KD++S+IY KL+ +K S + + RH V
Sbjct: 509 KLLDHWVCSQELLRHFWSSYPVSTQNLVSKTRRLKDSISQIYSKLEDIKVSAESDLRHHV 568
Query: 58 SLLVHPMLKALDAHLL 11
SL+VHPM +AL+A LL
Sbjct: 569 SLVVHPMQQALNAALL 584
>ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Glycine max]
Length = 587
Score = 115 bits (288), Expect(2) = 2e-44
Identities = 58/116 (50%), Positives = 83/116 (71%)
Frame = -2
Query: 579 LTEIEDLQDRHNLRSAPLCIKDLQQYFDSQQANSLRTLGDAEIGTKPIILGLGTQKSFGS 400
+T I+DLQ + N APLCIKD + YFD QQAN+++TL D++ G + + LG+++++GS
Sbjct: 373 MTLIDDLQAQDNHPYAPLCIKDPRDYFDFQQANAVKTLDDSQTGMEQMKCSLGSEEAYGS 432
Query: 399 LKTLISEMKENKFSDPVVRSGTALKVLNGLTQHHSSAKYHIGKSPQESVLDRLPNS 232
L+ IS++K DP+ ALKVLNGLT++ SS KYH+G+S Q SVLD LPN+
Sbjct: 433 LRASISKIKTTGLRDPLFSPDVALKVLNGLTKNISSPKYHLGRSSQGSVLDILPNT 488
Score = 90.1 bits (222), Expect(2) = 2e-44
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = -1
Query: 235 LLHHWASVQELLKHFWSSYPITTTYLSTMVNRFKDAMSEIYPKLQGVKESVQFEFRHQVS 56
LL HW QELL+HFWSSYPITT L R K+++S+IY KL+ +K S + + RH VS
Sbjct: 493 LLDHWVCSQELLRHFWSSYPITTQNLVNKTRRLKESISQIYSKLEDIKVSAESDLRHHVS 552
Query: 55 LLVHPMLKALDAHLL 11
L+VHPM +AL+A LL
Sbjct: 553 LVVHPMQQALNAALL 567