BLASTX nr result

ID: Coptis21_contig00032270 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032270
         (254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003615476.1| Integral membrane protein-like protein [Medi...    63   2e-08
ref|XP_003544267.1| PREDICTED: uncharacterized protein LOC100800...    55   5e-06

>ref|XP_003615476.1| Integral membrane protein-like protein [Medicago truncatula]
           gi|355516811|gb|AES98434.1| Integral membrane
           protein-like protein [Medicago truncatula]
          Length = 989

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = +3

Query: 3   YCDTHDGTWKCHHCTWTYR-MPTSAIHPIQNPNAHSHLPVNVKTLVQNGPSFSLEIKGTE 179
           + D   G WKCHHCTW+ +   +    P+ N   +  LP+NVKTL+Q+GP F  E KG  
Sbjct: 130 FFDKQQGVWKCHHCTWSTKPFDSPRTGPMWNLKGYPDLPMNVKTLIQHGPCFVWETKG-- 187

Query: 180 TCNEIRGI 203
             NE+ G+
Sbjct: 188 --NEVNGL 193


>ref|XP_003544267.1| PREDICTED: uncharacterized protein LOC100800852 [Glycine max]
          Length = 647

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 31/81 (38%), Positives = 41/81 (50%)
 Frame = +3

Query: 3   YCDTHDGTWKCHHCTWTYRMPTSAIHPIQNPNAHSHLPVNVKTLVQNGPSFSLEIKGTET 182
           Y D   G WKCHHCTWT R  +    P  N   +  L + VKT++Q+GP F  + K    
Sbjct: 138 YFDEQQGMWKCHHCTWTKRFDSPWTVPNWNLKGYPDL-MTVKTMIQHGPFFVCDTKD--- 193

Query: 183 CNEIRGILYSVAGHSVAEKNL 245
            +E+ G+    A  SV   NL
Sbjct: 194 -DEVNGVQNGDAFWSVHPTNL 213


Top