BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032244
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003527651.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...    82   6e-14
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...    81   1e-13
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...    81   1e-13
ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chlor...    80   2e-13
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...    77   2e-12

>ref|XP_003527651.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
           chloroplastic-like [Glycine max]
          Length = 441

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 36/55 (65%), Positives = 43/55 (78%)
 Frame = +2

Query: 17  LTKLVSMLERPCLHALALGFKHPHTGEHIKFSCAPPADFRETLSLLRSVGSKKTS 181
           + K+VS L+RPCLHAL LGF+HPHTGE + FSC PPADF E LS LR +GS+  S
Sbjct: 380 VVKMVSRLDRPCLHALTLGFQHPHTGEQVHFSCEPPADFAEILSQLRRIGSETVS 434


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
           chloroplastic-like [Cucumis sativus]
          Length = 452

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +2

Query: 17  LTKLVSMLERPCLHALALGFKHPHTGEHIKFSCAPPADFRETLSLLRSVGSKK 175
           L +LVS LERPCLHAL LGF HPHTG++I+FSC PP DF E LS LR +G++K
Sbjct: 373 LMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREIGTQK 425


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
           sativus]
          Length = 453

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +2

Query: 17  LTKLVSMLERPCLHALALGFKHPHTGEHIKFSCAPPADFRETLSLLRSVGSKK 175
           L +LVS LERPCLHAL LGF HPHTG++I+FSC PP DF E LS LR +G++K
Sbjct: 374 LMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREIGTQK 426


>ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Glycine
           max]
          Length = 450

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 35/55 (63%), Positives = 42/55 (76%)
 Frame = +2

Query: 17  LTKLVSMLERPCLHALALGFKHPHTGEHIKFSCAPPADFRETLSLLRSVGSKKTS 181
           + K+VS L+RPCLHA  LGF+HPHTGE + FSC PPADF E LS LR +GS+  S
Sbjct: 389 IVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSCEPPADFAEILSQLRRIGSETVS 443


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = +2

Query: 5   HRADLTKLVSMLERPCLHALALGFKHPHTGEHIKFSCAPPADFRETLSLLRSVGSKK 175
           H   L +LVS L+RPCLHA+ALGF HP TG+++ FSC PP DF E LS LR + ++K
Sbjct: 371 HHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEK 427