BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032057
         (502 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea...   255   3e-66
ref|NP_196419.1| RPA70-kDa subunit B [Arabidopsis thaliana] gi|6...   251   3e-65
ref|XP_002328669.1| predicted protein [Populus trichocarpa] gi|2...   249   1e-64
ref|XP_002514651.1| replication factor A 1, rfa1, putative [Rici...   249   2e-64
emb|CBI15109.3| unnamed protein product [Vitis vinifera]              246   2e-63

>dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea nil]
          Length = 604

 Score =  255 bits (651), Expect = 3e-66
 Identities = 126/166 (75%), Positives = 139/166 (83%)
 Frame = +1

Query: 4   LTRRVYPLNTLNPYNGTWTIKVRVTSKGNMRSYKNARGEGHVFNVELTDEEGTQIQATMF 183
           +TRR++PL +LNPY G WTIKVRVTSKGNMR YKNARGEG VFNVEL D++GT+IQATMF
Sbjct: 153 MTRRIHPLVSLNPYQGIWTIKVRVTSKGNMRFYKNARGEGCVFNVELADQDGTEIQATMF 212

Query: 184 NAAAQKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXXPE 363
           N AA+KFYDKFE+GKVYYISKGTL++ANKQFKTVQNDYEMTLN               PE
Sbjct: 213 NQAARKFYDKFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEAINEAAFVPE 272

Query: 364 TKFNFVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNETVP 501
           TKFNFV ID+L SYVNGRELVDVIGVVQNVS TMSIRRK NNE +P
Sbjct: 273 TKFNFVAIDELGSYVNGRELVDVIGVVQNVSSTMSIRRKSNNEMIP 318


>ref|NP_196419.1| RPA70-kDa subunit B [Arabidopsis thaliana]
           gi|6562316|emb|CAB62614.1| replication factor A-like
           protein [Arabidopsis thaliana]
           gi|332003852|gb|AED91235.1| RPA70-kDa subunit B
           [Arabidopsis thaliana]
          Length = 604

 Score =  251 bits (642), Expect = 3e-65
 Identities = 124/166 (74%), Positives = 142/166 (85%)
 Frame = +1

Query: 4   LTRRVYPLNTLNPYNGTWTIKVRVTSKGNMRSYKNARGEGHVFNVELTDEEGTQIQATMF 183
           +TRRV+PL +LNPY G+WTIKVRVT+KG MR+YKNARGEG VFNVELTDEEGTQIQATMF
Sbjct: 153 MTRRVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMF 212

Query: 184 NAAAQKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXXPE 363
           NAAA+KFYD+FEMGKVYYIS+G+LKLANKQFKTVQNDYEMTLN               PE
Sbjct: 213 NAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPE 272

Query: 364 TKFNFVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNETVP 501
           TKFNFV ID+L +YVN ++L+DVIGVVQ+VSPTMSIRRK +NE +P
Sbjct: 273 TKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIP 318


>ref|XP_002328669.1| predicted protein [Populus trichocarpa] gi|222838845|gb|EEE77196.1|
           predicted protein [Populus trichocarpa]
          Length = 603

 Score =  249 bits (637), Expect = 1e-64
 Identities = 123/166 (74%), Positives = 138/166 (83%)
 Frame = +1

Query: 4   LTRRVYPLNTLNPYNGTWTIKVRVTSKGNMRSYKNARGEGHVFNVELTDEEGTQIQATMF 183
           +TRRV+PL +LNPY G WTIKVRVTSKGNMR+Y+NARGEG VFNVELTD +GTQIQATMF
Sbjct: 153 MTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYRNARGEGCVFNVELTDGDGTQIQATMF 212

Query: 184 NAAAQKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXXPE 363
           N AA+KFYD+FE+GKVYYISKGTL++ANKQFKTVQNDYEMTLN               PE
Sbjct: 213 NEAAKKFYDRFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEASDEAACIPE 272

Query: 364 TKFNFVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNETVP 501
           TKF FV IDQL  YVN ++LVDVIG+VQ+VSPT SIRRK NNETVP
Sbjct: 273 TKFKFVPIDQLGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVP 318


>ref|XP_002514651.1| replication factor A 1, rfa1, putative [Ricinus communis]
           gi|223546255|gb|EEF47757.1| replication factor A 1,
           rfa1, putative [Ricinus communis]
          Length = 622

 Score =  249 bits (636), Expect = 2e-64
 Identities = 124/166 (74%), Positives = 138/166 (83%)
 Frame = +1

Query: 4   LTRRVYPLNTLNPYNGTWTIKVRVTSKGNMRSYKNARGEGHVFNVELTDEEGTQIQATMF 183
           +TRRV+PL +LNPY G WTIKVRVTSKGNMR+YKNARGEG VFNVELTDE+GTQIQATMF
Sbjct: 172 MTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMF 231

Query: 184 NAAAQKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXXPE 363
           N AA+KFYDKF++GKVYYISKG+LK+ANKQF+TVQNDYEM LN               PE
Sbjct: 232 NEAARKFYDKFQLGKVYYISKGSLKVANKQFRTVQNDYEMNLNENSQVEEASDEAAFIPE 291

Query: 364 TKFNFVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNETVP 501
           TKFNFV IDQL  YV+  ELVDVIGVVQ+VSPTMSIRRK NN+ VP
Sbjct: 292 TKFNFVPIDQLGPYVSTNELVDVIGVVQSVSPTMSIRRKSNNDIVP 337


>emb|CBI15109.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  246 bits (627), Expect = 2e-63
 Identities = 120/166 (72%), Positives = 138/166 (83%)
 Frame = +1

Query: 4   LTRRVYPLNTLNPYNGTWTIKVRVTSKGNMRSYKNARGEGHVFNVELTDEEGTQIQATMF 183
           +TRRV+PL +LNPY G WTIKVR+T+KG MR+YKNARGEG VFNVELTDE+GTQIQATMF
Sbjct: 151 MTRRVHPLVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMF 210

Query: 184 NAAAQKFYDKFEMGKVYYISKGTLKLANKQFKTVQNDYEMTLNXXXXXXXXXXXXXXXPE 363
           N AA+KFY+KF++GKVYYISKG LK+ANKQFKTVQNDYEMTLN               PE
Sbjct: 211 NEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPE 270

Query: 364 TKFNFVQIDQLSSYVNGRELVDVIGVVQNVSPTMSIRRKLNNETVP 501
            KF FV+I++L  YVNG+ELVDVIGVVQ+VSPTMSIRRK NN+ VP
Sbjct: 271 AKFKFVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVP 316