BLASTX nr result

ID: Coptis21_contig00032041 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032041
         (761 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003556435.1| PREDICTED: HIV Tat-specific factor 1 homolog...    65   1e-08
gb|AFK46628.1| unknown [Lotus japonicus]                               65   2e-08
ref|XP_003536163.1| PREDICTED: HIV Tat-specific factor 1 homolog...    64   3e-08
dbj|BAJ53149.1| JHL23J11.4 [Jatropha curcas]                           63   6e-08
ref|XP_002512940.1| Splicing factor U2AF-associated protein, put...    63   8e-08

>ref|XP_003556435.1| PREDICTED: HIV Tat-specific factor 1 homolog [Glycine max]
          Length = 500

 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 32/68 (47%), Positives = 42/68 (61%)
 Frame = -3

Query: 753 RLNANFFLKLEMSLLKECRKFGPIDYMRVLENHPGGVVLVRVKSKNVAQDIANFMNGRRI 574
           R + N  L+LE  + +EC K GP+D +++ ENHP GVVLVR K +  AQ     MNGR  
Sbjct: 402 RADENLHLELEEDVKEECTKLGPVDSVKICENHPQGVVLVRFKDRKDAQKCIELMNGRWF 461

Query: 573 DNRQICAN 550
             RQI A+
Sbjct: 462 GGRQIHAS 469


>gb|AFK46628.1| unknown [Lotus japonicus]
          Length = 162

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 34/68 (50%), Positives = 43/68 (63%)
 Frame = -3

Query: 753 RLNANFFLKLEMSLLKECRKFGPIDYMRVLENHPGGVVLVRVKSKNVAQDIANFMNGRRI 574
           R + N  L+LE  + +EC K GPID ++V ENHP GVVLVR K +  AQ   + MNGR  
Sbjct: 64  RADENLRLELEEDVKEECTKLGPIDSVKVCENHPQGVVLVRFKDRKDAQTCIDTMNGRWF 123

Query: 573 DNRQICAN 550
             RQI A+
Sbjct: 124 GGRQIHAS 131


>ref|XP_003536163.1| PREDICTED: HIV Tat-specific factor 1 homolog [Glycine max]
          Length = 503

 Score = 64.3 bits (155), Expect = 3e-08
 Identities = 32/68 (47%), Positives = 42/68 (61%)
 Frame = -3

Query: 753 RLNANFFLKLEMSLLKECRKFGPIDYMRVLENHPGGVVLVRVKSKNVAQDIANFMNGRRI 574
           R + N  L+LE  + +EC K GP+D +++ ENHP GVVLVR K +  AQ     MNGR  
Sbjct: 405 RADENLRLELEEDVKEECTKLGPLDSVKICENHPQGVVLVRFKDRKDAQKCIELMNGRWF 464

Query: 573 DNRQICAN 550
             RQI A+
Sbjct: 465 GGRQIHAS 472


>dbj|BAJ53149.1| JHL23J11.4 [Jatropha curcas]
          Length = 552

 Score = 63.2 bits (152), Expect = 6e-08
 Identities = 31/68 (45%), Positives = 42/68 (61%)
 Frame = -3

Query: 753 RLNANFFLKLEMSLLKECRKFGPIDYMRVLENHPGGVVLVRVKSKNVAQDIANFMNGRRI 574
           R + N   +LE+ + +EC K GP+D ++V ENHP GVVLVR K +  AQ     MNGR  
Sbjct: 454 RADENLRSELELDVKEECVKLGPVDSVKVCENHPQGVVLVRFKDRKDAQKCIELMNGRWF 513

Query: 573 DNRQICAN 550
             RQ+ A+
Sbjct: 514 GGRQVHAS 521


>ref|XP_002512940.1| Splicing factor U2AF-associated protein, putative [Ricinus
           communis] gi|223547951|gb|EEF49443.1| Splicing factor
           U2AF-associated protein, putative [Ricinus communis]
          Length = 518

 Score = 62.8 bits (151), Expect = 8e-08
 Identities = 30/68 (44%), Positives = 43/68 (63%)
 Frame = -3

Query: 753 RLNANFFLKLEMSLLKECRKFGPIDYMRVLENHPGGVVLVRVKSKNVAQDIANFMNGRRI 574
           R + N   +LE+ + +EC K GP+D ++V ENHP GVVLV+ K +  AQ+    MNGR  
Sbjct: 420 RTDENLRSELEVDIREECVKLGPVDSVKVCENHPQGVVLVKFKDRKDAQNCIELMNGRWF 479

Query: 573 DNRQICAN 550
             RQ+ A+
Sbjct: 480 GGRQVHAS 487


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