BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031647
         (260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD20832.1| sigma factor [Spinacia oleracea]                       61   8e-08
ref|XP_003565817.1| PREDICTED: RNA polymerase sigma factor rpoD-...    55   6e-06

>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 27/46 (58%), Positives = 34/46 (73%)
 Frame = +3

Query: 3   GQCKSLQEIAEIFKCTKEWIRKIEKSALTKLRREEVQRNLSQYINL 140
           G C SL E+ ++F  +KEWIRK+EK ALTKLR E+ Q NL  Y+NL
Sbjct: 503 GHCMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHYLNL 548


>ref|XP_003565817.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
           distachyon]
          Length = 251

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 23/43 (53%), Positives = 34/43 (79%)
 Frame = +3

Query: 3   GQCKSLQEIAEIFKCTKEWIRKIEKSALTKLRREEVQRNLSQY 131
           G+C+SL++I+ I+  +KEWIRKIEKSA++KLR E+V   L  +
Sbjct: 206 GKCRSLEQISGIYHVSKEWIRKIEKSAMSKLRNEDVHHELKDF 248