BLASTX nr result

ID: Coptis21_contig00031605 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031605
         (418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACD56664.1| putative leucine-rich repeat transmembrane protei...   177   6e-43
gb|AAT64032.1| putative leucine-rich repeat transmembrane protei...   177   6e-43
gb|AAT64017.1| putative leucine-rich repeat transmembrane protei...   177   6e-43
gb|ACD56650.1| putative leucine-rich repeat transmembrane protei...   177   1e-42
ref|XP_002305735.1| predicted protein [Populus trichocarpa] gi|2...   174   5e-42

>gb|ACD56664.1| putative leucine-rich repeat transmembrane protein [Gossypium
           arboreum]
          Length = 618

 Score =  177 bits (450), Expect = 6e-43
 Identities = 91/135 (67%), Positives = 101/135 (74%)
 Frame = -1

Query: 418 GFGILLLELITGQKALDAGNGQIQKGMILDWVRTLHEEKRLEVLVDRDLNGCFXXXXXXX 239
           GFGILLLELITGQK LDAGNGQ+QKGMILDWVRTLHEE+RLEVLVDRDL GCF       
Sbjct: 484 GFGILLLELITGQKTLDAGNGQVQKGMILDWVRTLHEERRLEVLVDRDLQGCFDTIELET 543

Query: 238 XXXXXLQCTQPHPNQRPKMSEVVKVLEGIVXXXXXXXXXXXXXXXXGACSFSRNYNEVHE 59
                LQCT+P P+ RPKMSEV+KVLEG+V                 A SFSRNY++VHE
Sbjct: 544 VTELALQCTRPQPHLRPKMSEVLKVLEGLVQSGTEEPQGGTNHCETSAYSFSRNYSDVHE 603

Query: 58  ESSFVIEAIELSGPR 14
           ESSF+IEA+ELSGPR
Sbjct: 604 ESSFIIEAMELSGPR 618


>gb|AAT64032.1| putative leucine-rich repeat transmembrane protein [Gossypium
           hirsutum]
          Length = 618

 Score =  177 bits (450), Expect = 6e-43
 Identities = 91/135 (67%), Positives = 101/135 (74%)
 Frame = -1

Query: 418 GFGILLLELITGQKALDAGNGQIQKGMILDWVRTLHEEKRLEVLVDRDLNGCFXXXXXXX 239
           GFGILLLELITGQK LDAGNGQ+QKGMILDWVRTLHEE+RLEVLVDRDL GCF       
Sbjct: 484 GFGILLLELITGQKTLDAGNGQVQKGMILDWVRTLHEERRLEVLVDRDLQGCFDTIELET 543

Query: 238 XXXXXLQCTQPHPNQRPKMSEVVKVLEGIVXXXXXXXXXXXXXXXXGACSFSRNYNEVHE 59
                LQCT+P P+ RPKMSEV+KVLEG+V                 A SFSRNY++VHE
Sbjct: 544 VTELALQCTRPQPHLRPKMSEVLKVLEGLVQSGTEEPQGGTNHCETSAYSFSRNYSDVHE 603

Query: 58  ESSFVIEAIELSGPR 14
           ESSF+IEA+ELSGPR
Sbjct: 604 ESSFIIEAMELSGPR 618


>gb|AAT64017.1| putative leucine-rich repeat transmembrane protein [Gossypium
           hirsutum]
          Length = 618

 Score =  177 bits (450), Expect = 6e-43
 Identities = 91/135 (67%), Positives = 101/135 (74%)
 Frame = -1

Query: 418 GFGILLLELITGQKALDAGNGQIQKGMILDWVRTLHEEKRLEVLVDRDLNGCFXXXXXXX 239
           GFGILLLELITGQK LDAGNGQ+QKGMILDWVRTLHEE+RLEVLVDRDL GCF       
Sbjct: 484 GFGILLLELITGQKTLDAGNGQVQKGMILDWVRTLHEERRLEVLVDRDLQGCFDTIELET 543

Query: 238 XXXXXLQCTQPHPNQRPKMSEVVKVLEGIVXXXXXXXXXXXXXXXXGACSFSRNYNEVHE 59
                LQCT+P P+ RPKMSEV+KVLEG+V                 A SFSRNY++VHE
Sbjct: 544 VTELALQCTRPQPHLRPKMSEVLKVLEGLVQSGTDEPQGGTNHCETSAYSFSRNYSDVHE 603

Query: 58  ESSFVIEAIELSGPR 14
           ESSF+IEA+ELSGPR
Sbjct: 604 ESSFIIEAMELSGPR 618


>gb|ACD56650.1| putative leucine-rich repeat transmembrane protein [Gossypioides
           kirkii]
          Length = 618

 Score =  177 bits (448), Expect = 1e-42
 Identities = 91/135 (67%), Positives = 101/135 (74%)
 Frame = -1

Query: 418 GFGILLLELITGQKALDAGNGQIQKGMILDWVRTLHEEKRLEVLVDRDLNGCFXXXXXXX 239
           GFGILLLELITGQK L+AGNGQ+QKGMILDWVRTLHEEKRLEVLVDRDL GCF       
Sbjct: 484 GFGILLLELITGQKTLNAGNGQVQKGMILDWVRTLHEEKRLEVLVDRDLQGCFDAIELET 543

Query: 238 XXXXXLQCTQPHPNQRPKMSEVVKVLEGIVXXXXXXXXXXXXXXXXGACSFSRNYNEVHE 59
                LQCT+P P+ RPKMSEV+KVLEG+V                 A SFSRNY++VHE
Sbjct: 544 VTELALQCTRPQPHLRPKMSEVLKVLEGLVQLGAEEPQGGTIHCETSAYSFSRNYSDVHE 603

Query: 58  ESSFVIEAIELSGPR 14
           ESSF+IEA+ELSGPR
Sbjct: 604 ESSFIIEAMELSGPR 618


>ref|XP_002305735.1| predicted protein [Populus trichocarpa] gi|222848699|gb|EEE86246.1|
           predicted protein [Populus trichocarpa]
          Length = 616

 Score =  174 bits (442), Expect = 5e-42
 Identities = 93/136 (68%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
 Frame = -1

Query: 418 GFGILLLELITGQKALDAGNGQIQKGMILDWVRTLHEEKRLEVLVDRDLNGCFXXXXXXX 239
           GFGILLLELITGQKALDAGNGQ+QKGMILDWVRTLHEEKRLEVLVDRDL GCF       
Sbjct: 481 GFGILLLELITGQKALDAGNGQVQKGMILDWVRTLHEEKRLEVLVDRDLKGCFDVSELEK 540

Query: 238 XXXXXLQCTQPHPNQRPKMSEVVKVLEGIV-XXXXXXXXXXXXXXXXGACSFSRNYNEVH 62
                LQCTQ HPN RPKMSEV+KVLEGIV                  AC+ SR+ ++VH
Sbjct: 541 AVDLALQCTQSHPNLRPKMSEVLKVLEGIVGQPAIEESQGATSIGEARACNCSRHCSDVH 600

Query: 61  EESSFVIEAIELSGPR 14
           EESSF+IEA+ELSGPR
Sbjct: 601 EESSFIIEAMELSGPR 616


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