BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031578
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   108   2e-41
gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]     108   2e-41
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat...   107   1e-40
gb|ABA99612.1| retrotransposon protein, putative, unclassified [...   103   6e-40
gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   105   8e-40

>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  108 bits (271), Expect(2) = 2e-41
 Identities = 53/87 (60%), Positives = 65/87 (74%)
 Frame = -3

Query: 266  VMIWYLLGNNKMIHYFLGMEIHQVDEGISISQRKYVENVLEKLKMSGCKAVATPLQVNEK 87
            +M  Y + +  ++HYFLGME+HQ DEGI ISQRKY EN+L+K KM  CK+V TPL  NEK
Sbjct: 1060 MMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEK 1119

Query: 86   LLKGDGAMKADASTYRSMIGSLLYLTA 6
                DGA KAD + YRS++GSLLYLTA
Sbjct: 1120 QKARDGADKADPTIYRSLVGSLLYLTA 1146



 Score = 85.5 bits (210), Expect(2) = 2e-41
 Identities = 41/59 (69%), Positives = 49/59 (83%)
 Frame = -2

Query: 423  KKALYGLKQAPRAWYS*IDKYFVKNGFCKRENEPTLYIKSEGASNILIVSLYGDDLVFT 247
            KKALYGLKQAPRAWYS IDKYF++ GF K  +EPTLY+   G ++ILIVSLY DDL++T
Sbjct: 989  KKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEPTLYVNKTG-TDILIVSLYVDDLIYT 1046


>gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1136

 Score =  108 bits (271), Expect(2) = 2e-41
 Identities = 53/87 (60%), Positives = 65/87 (74%)
 Frame = -3

Query: 266  VMIWYLLGNNKMIHYFLGMEIHQVDEGISISQRKYVENVLEKLKMSGCKAVATPLQVNEK 87
            +M  Y + +  ++HYFLGME+HQ DEGI ISQRKY EN+L+K KM  CK+V TPL  NEK
Sbjct: 844  MMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEK 903

Query: 86   LLKGDGAMKADASTYRSMIGSLLYLTA 6
                DGA KAD + YRS++GSLLYLTA
Sbjct: 904  QKARDGADKADPTIYRSLVGSLLYLTA 930



 Score = 85.1 bits (209), Expect(2) = 2e-41
 Identities = 41/59 (69%), Positives = 49/59 (83%)
 Frame = -2

Query: 423 KKALYGLKQAPRAWYS*IDKYFVKNGFCKRENEPTLYIKSEGASNILIVSLYGDDLVFT 247
           KKALYGLKQAPRAWYS IDKYF++ GF K  +EP LY+K  G ++ILIVSLY DDL++T
Sbjct: 773 KKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEPILYVKKTG-TDILIVSLYVDDLIYT 830


>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108708461|gb|ABF96256.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1167

 Score =  107 bits (267), Expect(2) = 1e-40
 Identities = 52/87 (59%), Positives = 64/87 (73%)
 Frame = -3

Query: 266  VMIWYLLGNNKMIHYFLGMEIHQVDEGISISQRKYVENVLEKLKMSGCKAVATPLQVNEK 87
            +M  Y + +  ++HYFLGME+HQ DEGI ISQRKY EN+L+K KM  CK+V TPL  NEK
Sbjct: 892  MMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEK 951

Query: 86   LLKGDGAMKADASTYRSMIGSLLYLTA 6
                DGA K D + YRS++GSLLYLTA
Sbjct: 952  QKARDGADKVDPTIYRSLVGSLLYLTA 978



 Score = 84.3 bits (207), Expect(2) = 1e-40
 Identities = 41/59 (69%), Positives = 48/59 (81%)
 Frame = -2

Query: 423 KKALYGLKQAPRAWYS*IDKYFVKNGFCKRENEPTLYIKSEGASNILIVSLYGDDLVFT 247
           KKALYGLKQAPR WYS IDKYF++ GF K  +EPTLYI   G ++ILIVSLY DDL++T
Sbjct: 821 KKALYGLKQAPRVWYSQIDKYFIQKGFAKSISEPTLYINKTG-TDILIVSLYVDDLIYT 878


>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1198

 Score =  103 bits (258), Expect(2) = 6e-40
 Identities = 51/87 (58%), Positives = 64/87 (73%)
 Frame = -3

Query: 266  VMIWYLLGNNKMIHYFLGMEIHQVDEGISISQRKYVENVLEKLKMSGCKAVATPLQVNEK 87
            +M  Y + +  ++HYFLGME+HQ DEGI ISQRKY +N+L+K KM  CK+V TPL  NEK
Sbjct: 923  MMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAKNILKKFKMDNCKSVTTPLLPNEK 982

Query: 86   LLKGDGAMKADASTYRSMIGSLLYLTA 6
                 GA KAD + YRS++GSLLYLTA
Sbjct: 983  QKARYGADKADPTIYRSLVGSLLYLTA 1009



 Score = 85.5 bits (210), Expect(2) = 6e-40
 Identities = 41/59 (69%), Positives = 49/59 (83%)
 Frame = -2

Query: 423  KKALYGLKQAPRAWYS*IDKYFVKNGFCKRENEPTLYIKSEGASNILIVSLYGDDLVFT 247
            KKALYGLKQAPRAWYS IDKYF++ GF K  +EPTLY+   G ++ILIVSLY DDL++T
Sbjct: 852  KKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEPTLYVNKTG-TDILIVSLYVDDLIYT 909


>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  105 bits (261), Expect(2) = 8e-40
 Identities = 51/87 (58%), Positives = 64/87 (73%)
 Frame = -3

Query: 266  VMIWYLLGNNKMIHYFLGMEIHQVDEGISISQRKYVENVLEKLKMSGCKAVATPLQVNEK 87
            +M  Y + +  +++YFLGME+HQ DEGI ISQRKY EN+L+K KM  CK+V TPL  NEK
Sbjct: 850  MMHTYEMSDLGLLYYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEK 909

Query: 86   LLKGDGAMKADASTYRSMIGSLLYLTA 6
                DGA K D + YRS++GSLLYLTA
Sbjct: 910  QKARDGADKVDPTIYRSLVGSLLYLTA 936



 Score = 84.0 bits (206), Expect(2) = 8e-40
 Identities = 40/59 (67%), Positives = 48/59 (81%)
 Frame = -2

Query: 423 KKALYGLKQAPRAWYS*IDKYFVKNGFCKRENEPTLYIKSEGASNILIVSLYGDDLVFT 247
           KKALYGLKQAPR WYS IDKYF++ GF K  +EPTLY+   G ++ILIVSLY DDL++T
Sbjct: 779 KKALYGLKQAPRVWYSQIDKYFIQKGFAKSISEPTLYVNKTG-TDILIVSLYVDDLIYT 836