BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031494
         (511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   196   2e-48
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   195   3e-48
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   195   4e-48
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   191   4e-47
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   186   1e-45

>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  196 bits (497), Expect = 2e-48
 Identities = 99/168 (58%), Positives = 120/168 (71%)
 Frame = -3

Query: 506 RCCPQLPNSLVHKLFRLRQVRKQCPSXXXXXXXXAPEQRLKRVAAKDELNVGDRIFLPLS 327
           RCCP+LP SLV KLFRLR+VR+                +LKRVAAKD LNVGD+IFLP+S
Sbjct: 103 RCCPELPRSLVQKLFRLRKVRRGSSMIENSEYNLEARDQLKRVAAKDILNVGDQIFLPMS 162

Query: 326 VXXXXXXXXXXXXXEFRCSVDEVNYIRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDV 147
           V                C+ +E  ++ S++LHKDP I+VINKP G+PVQGGIG+K SLD 
Sbjct: 163 VQVFSTEKTRDY-----CNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDE 217

Query: 146 LAATCLIYDYPEPPRLVHRLDRDSSGILVLGRTQTSAAILHSIFREKT 3
           LAA+CL Y Y EPPRLVHRLDRDSSGIL++GRT TS ++LHS+FREKT
Sbjct: 218 LAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKT 265


>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  195 bits (496), Expect = 3e-48
 Identities = 103/169 (60%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
 Frame = -3

Query: 506 RCCPQLPNSLVHKLFRLRQVRKQCPSXXXXXXXXA-PEQRLKRVAAKDELNVGDRIFLPL 330
           RCCPQLP SLV KLFRLRQVR++  +           E RLKRVAAKD +N+GD+I LP+
Sbjct: 101 RCCPQLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPI 160

Query: 329 SVXXXXXXXXXXXXXEFRCSVDEVNYIRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLD 150
           +V              + C+ +E+N++ ++ L+KDP IIV+NKP G+PVQGGIGIK SLD
Sbjct: 161 TVEEFPSEKHE-----YHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLD 215

Query: 149 VLAATCLIYDYPEPPRLVHRLDRDSSGILVLGRTQTSAAILHSIFREKT 3
            LAAT L YD  EPPRLVHRLDRDSSGIL++GRTQTSA ILHSIFREKT
Sbjct: 216 ELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKT 264


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  195 bits (495), Expect = 4e-48
 Identities = 102/168 (60%), Positives = 119/168 (70%)
 Frame = -3

Query: 506 RCCPQLPNSLVHKLFRLRQVRKQCPSXXXXXXXXAPEQRLKRVAAKDELNVGDRIFLPLS 327
           RCCP+LP +LV KLFRLRQV+++  +          E + KRVAAKD +NVGDRIFLP+S
Sbjct: 167 RCCPELPRNLVQKLFRLRQVKRELLNVGDGEM----EHKTKRVAAKDLMNVGDRIFLPIS 222

Query: 326 VXXXXXXXXXXXXXEFRCSVDEVNYIRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDV 147
           V                C   E N+IR + L+KD  IIV+NKP GMPVQGGIGIK S D 
Sbjct: 223 VQALPFEKQKC-----HCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDE 277

Query: 146 LAATCLIYDYPEPPRLVHRLDRDSSGILVLGRTQTSAAILHSIFREKT 3
           LAA+CL YDY EPPRLVHRLDRDSSGILV+GRTQTS  +LHS+FREKT
Sbjct: 278 LAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMVLHSVFREKT 325


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 466

 Score =  191 bits (486), Expect = 4e-47
 Identities = 99/168 (58%), Positives = 120/168 (71%)
 Frame = -3

Query: 506 RCCPQLPNSLVHKLFRLRQVRKQCPSXXXXXXXXAPEQRLKRVAAKDELNVGDRIFLPLS 327
           RCCP+LP SLV KLFRLR+V +Q               +LKRVAAKD LNVGD+IFLP+S
Sbjct: 103 RCCPELPRSLVQKLFRLRKVPRQL-----NVGCGNSHHQLKRVAAKDILNVGDQIFLPMS 157

Query: 326 VXXXXXXXXXXXXXEFRCSVDEVNYIRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDV 147
           V                C+ +E  ++ S++LHKDP I+VINKP G+PVQGGIG+K SLD 
Sbjct: 158 VQVFSTEKTRDY-----CNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDE 212

Query: 146 LAATCLIYDYPEPPRLVHRLDRDSSGILVLGRTQTSAAILHSIFREKT 3
           LAA+CL Y Y EPPRLVHRLDRDSSGIL++GRT TS ++LHS+FREKT
Sbjct: 213 LAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKT 260


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 477

 Score =  186 bits (473), Expect = 1e-45
 Identities = 98/168 (58%), Positives = 117/168 (69%)
 Frame = -3

Query: 506 RCCPQLPNSLVHKLFRLRQVRKQCPSXXXXXXXXAPEQRLKRVAAKDELNVGDRIFLPLS 327
           RC P LP +LV KLFRLRQVR+Q               +LKRVAAK+ LNVGDRI+LPLS
Sbjct: 98  RCRPDLPRTLVQKLFRLRQVRRQMS--LSVDGHELQRSQLKRVAAKESLNVGDRIYLPLS 155

Query: 326 VXXXXXXXXXXXXXEFRCSVDEVNYIRSIILHKDPDIIVINKPRGMPVQGGIGIKDSLDV 147
           V              F+CS +E  ++ S++L+KDP IIV+NKP G+ VQGG GIK S+D 
Sbjct: 156 VDNDTPPTPPAKKESFQCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDE 215

Query: 146 LAATCLIYDYPEPPRLVHRLDRDSSGILVLGRTQTSAAILHSIFREKT 3
           LAATCL +D  E PRLVHRLDRD SG+LVL RTQT+A +LHSIFREKT
Sbjct: 216 LAATCLTFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKT 263