BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031481
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi...   120   2e-25
emb|CAN60886.1| hypothetical protein VITISV_008816 [Vitis vinifera]   119   3e-25
emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera]   117   1e-24
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t...   115   3e-24
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...   115   5e-24

>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  120 bits (300), Expect = 2e-25
 Identities = 53/74 (71%), Positives = 65/74 (87%)
 Frame = +3

Query: 3   FFSKHGVIHQRSCVATPQQNAVVERKHRHLLNVARALRFQAHLPLSFWGECILTAGYLIN 182
           FF + GVIH+RSCVATP++N  VERKHRHLLNVARALRFQA+LP+ FWGEC+LTA YLIN
Sbjct: 527 FFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLIN 586

Query: 183 KIPSTLLNGKSPHE 224
           + PS++LN  +P+E
Sbjct: 587 RTPSSVLNDSTPYE 600


>emb|CAN60886.1| hypothetical protein VITISV_008816 [Vitis vinifera]
          Length = 616

 Score =  119 bits (298), Expect = 3e-25
 Identities = 56/81 (69%), Positives = 62/81 (76%)
 Frame = +3

Query: 3   FFSKHGVIHQRSCVATPQQNAVVERKHRHLLNVARALRFQAHLPLSFWGECILTAGYLIN 182
           +F   G++HQ SCV TPQQN  VERKHRH+LNVARAL FQAHLPL F GECIL AGYLIN
Sbjct: 216 YFDXIGIVHQTSCVGTPQQNGRVERKHRHILNVARALXFQAHLPLEFRGECILXAGYLIN 275

Query: 183 KIPSTLLNGKSPHELCLQHLP 245
             PS LLNGKSP+E+     P
Sbjct: 276 TTPSVLLNGKSPYEILFGQKP 296


>emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera]
          Length = 1109

 Score =  117 bits (293), Expect = 1e-24
 Identities = 51/80 (63%), Positives = 61/80 (76%)
 Frame = +3

Query: 6   FSKHGVIHQRSCVATPQQNAVVERKHRHLLNVARALRFQAHLPLSFWGECILTAGYLINK 185
           F+KHG++HQ SCV  PQ N  VERKHRH+LNV RALRFQAHLP+ FWGEC+L A YLIN 
Sbjct: 461 FAKHGILHQTSCVGXPQXNGHVERKHRHILNVVRALRFQAHLPIEFWGECVLIARYLINX 520

Query: 186 IPSTLLNGKSPHELCLQHLP 245
            PS  L+GK+P+E+     P
Sbjct: 521 TPSVFLDGKTPYEILYGQAP 540


>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1462

 Score =  115 bits (289), Expect = 3e-24
 Identities = 53/81 (65%), Positives = 60/81 (74%)
 Frame = +3

Query: 3   FFSKHGVIHQRSCVATPQQNAVVERKHRHLLNVARALRFQAHLPLSFWGECILTAGYLIN 182
           FF  HG+IH+ SCV TPQQN  VERKHRH+LNVARALRFQA LP+ FW  C LTA YLIN
Sbjct: 605 FFVDHGIIHETSCVGTPQQNGRVERKHRHILNVARALRFQARLPIEFWSYCALTAAYLIN 664

Query: 183 KIPSTLLNGKSPHELCLQHLP 245
           + P+ LL GK+P EL     P
Sbjct: 665 RTPTPLLQGKTPFELLYNRPP 685


>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score =  115 bits (287), Expect = 5e-24
 Identities = 50/81 (61%), Positives = 63/81 (77%)
 Frame = +3

Query: 3   FFSKHGVIHQRSCVATPQQNAVVERKHRHLLNVARALRFQAHLPLSFWGECILTAGYLIN 182
           +F   G+ H+ SCV TP QN  VERKHRH+LN+ARALRFQ++LP+ FWGECIL+A YLIN
Sbjct: 427 YFLHKGITHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLIN 486

Query: 183 KIPSTLLNGKSPHELCLQHLP 245
           + PS LL GKSP+E+  +  P
Sbjct: 487 RTPSMLLQGKSPYEMLYKTAP 507