BLASTX nr result
ID: Coptis21_contig00031419
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00031419
(403 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi... 159 3e-37
emb|CBI26127.3| unnamed protein product [Vitis vinifera] 159 3e-37
ref|XP_002516850.1| pentatricopeptide repeat-containing protein,... 158 4e-37
ref|XP_003609573.1| Pentatricopeptide repeat-containing protein ... 151 6e-35
ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containi... 149 2e-34
>ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Vitis vinifera]
Length = 623
Score = 159 bits (401), Expect = 3e-37
Identities = 82/134 (61%), Positives = 100/134 (74%)
Frame = +2
Query: 2 NLYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQ 181
+L+ TSKI ALA+ G+IT+AR+LFDEM +D V WNAML+SYS+LG QQ + LF M+
Sbjct: 4 HLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMR 63
Query: 182 ISGLRPDHFSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPS 361
I+ RPD F+FTA+LSA A GEL G K+HA VV G QSS+PV NSL+DMYGKCL +
Sbjct: 64 IANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSAT 123
Query: 362 SASRVFEEMERRNE 403
SA RVFEEM NE
Sbjct: 124 SARRVFEEMSIMNE 137
Score = 73.2 bits (178), Expect = 2e-11
Identities = 34/121 (28%), Positives = 66/121 (54%)
Frame = +2
Query: 26 ITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRPDH 205
I A + G A +F ++++V+W +M++ Y++ G +Q + F M + ++PD
Sbjct: 276 IDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDD 335
Query: 206 FSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPSSASRVFEE 385
F+F A L A + L G+ +H ++ +G+ + + V N LV+MY KC ++ F+E
Sbjct: 336 FTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKE 395
Query: 386 M 388
+
Sbjct: 396 I 396
Score = 72.0 bits (175), Expect = 5e-11
Identities = 36/123 (29%), Positives = 65/123 (52%)
Frame = +2
Query: 20 SKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRP 199
S + A SG AR +FD M ++ + WN M+S Y + G + + LF M+ L+P
Sbjct: 142 SLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQP 201
Query: 200 DHFSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPSSASRVF 379
D ++F+A ++A + E +G +H +++ G+ ++ V NS++ Y K +VF
Sbjct: 202 DQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVF 261
Query: 380 EEM 388
E +
Sbjct: 262 ESI 264
Score = 57.8 bits (138), Expect = 9e-07
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = +2
Query: 26 ITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRPDH 205
+ A+ G I + F E+ +D+V+WNAML G + Q +EL+ +M SG++PD
Sbjct: 377 VNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDK 436
Query: 206 FSFTASLSASADAGELHFGRKV-HALVVRFGYQSSMPVCNSLVDMYGKCLLPSSASRVFE 382
+F L + +G + G+ + ++V +G +VD+ G+ + A + +
Sbjct: 437 VTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVD 496
Query: 383 EMER 394
E R
Sbjct: 497 EYSR 500
>emb|CBI26127.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 159 bits (401), Expect = 3e-37
Identities = 82/134 (61%), Positives = 100/134 (74%)
Frame = +2
Query: 2 NLYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQ 181
+L+ TSKI ALA+ G+IT+AR+LFDEM +D V WNAML+SYS+LG QQ + LF M+
Sbjct: 4 HLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMR 63
Query: 182 ISGLRPDHFSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPS 361
I+ RPD F+FTA+LSA A GEL G K+HA VV G QSS+PV NSL+DMYGKCL +
Sbjct: 64 IANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSAT 123
Query: 362 SASRVFEEMERRNE 403
SA RVFEEM NE
Sbjct: 124 SARRVFEEMSIMNE 137
Score = 73.2 bits (178), Expect = 2e-11
Identities = 34/121 (28%), Positives = 66/121 (54%)
Frame = +2
Query: 26 ITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRPDH 205
I A + G A +F ++++V+W +M++ Y++ G +Q + F M + ++PD
Sbjct: 256 IDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDD 315
Query: 206 FSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPSSASRVFEE 385
F+F A L A + L G+ +H ++ +G+ + + V N LV+MY KC ++ F+E
Sbjct: 316 FTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKE 375
Query: 386 M 388
+
Sbjct: 376 I 376
Score = 61.6 bits (148), Expect = 6e-08
Identities = 31/103 (30%), Positives = 55/103 (53%)
Frame = +2
Query: 20 SKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRP 199
S + A SG AR +FD M ++ + WN M+S Y + G + + LF M+ L+P
Sbjct: 142 SLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQP 201
Query: 200 DHFSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSL 328
D ++F+A ++A + E +G +H +++ G+ M V S+
Sbjct: 202 DQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESI 244
Score = 57.8 bits (138), Expect = 9e-07
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = +2
Query: 26 ITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRPDH 205
+ A+ G I + F E+ +D+V+WNAML G + Q +EL+ +M SG++PD
Sbjct: 357 VNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDK 416
Query: 206 FSFTASLSASADAGELHFGRKV-HALVVRFGYQSSMPVCNSLVDMYGKCLLPSSASRVFE 382
+F L + +G + G+ + ++V +G +VD+ G+ + A + +
Sbjct: 417 VTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVD 476
Query: 383 EMER 394
E R
Sbjct: 477 EYSR 480
>ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543938|gb|EEF45464.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 623
Score = 158 bits (400), Expect = 4e-37
Identities = 77/134 (57%), Positives = 98/134 (73%)
Frame = +2
Query: 2 NLYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQ 181
NL+ +TSKI+AL SG I ARKLFDEM RD V WN+M++SYS+LGF Q+ + +F M+
Sbjct: 4 NLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMR 63
Query: 182 ISGLRPDHFSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPS 361
+ +PDHF+FTA+LSA A AG FG K+HALV+ GY SS+PV NSL+DMYGKC
Sbjct: 64 NTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAF 123
Query: 362 SASRVFEEMERRNE 403
SA +VF+EM NE
Sbjct: 124 SAGQVFKEMGDINE 137
Score = 75.5 bits (184), Expect = 4e-12
Identities = 35/108 (32%), Positives = 60/108 (55%)
Frame = +2
Query: 26 ITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRPDH 205
I A + G + A +F + +++IV+W +M++ Y++ G+ ++ + F M + PD
Sbjct: 276 IDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGYARNGYGEEALRFFVAMASNCFLPDD 335
Query: 206 FSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKC 349
F+F A L A + L GR VH +R G+ + + V N LV+MY KC
Sbjct: 336 FTFGAVLHACSSLAVLGHGRMVHGCAIRNGFSTYLYVGNGLVNMYAKC 383
Score = 70.9 bits (172), Expect = 1e-10
Identities = 37/125 (29%), Positives = 71/125 (56%)
Frame = +2
Query: 20 SKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRP 199
S + A SG+ + A ++F+ M ++ + WN M++ + G + +++F +M+ S L P
Sbjct: 142 SLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREMRESLLEP 201
Query: 200 DHFSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPSSASRVF 379
D ++++A +SA ++ E G +H LV+R G+ S+M NS++ +Y K + A +V
Sbjct: 202 DQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDALKVV 261
Query: 380 EEMER 394
E R
Sbjct: 262 ESTGR 266
>ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510628|gb|AES91770.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 665
Score = 151 bits (381), Expect = 6e-35
Identities = 74/134 (55%), Positives = 101/134 (75%), Gaps = 1/134 (0%)
Frame = +2
Query: 5 LYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQ- 181
L TS+I +LARSG+I ARKLFDEM +RD V WNAML++YS+LG QQ +LF M+
Sbjct: 5 LIRATSEIVSLARSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRR 64
Query: 182 ISGLRPDHFSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPS 361
IS +PD+FS++A++++ A A ++ FG K+H+LVV GYQSS+PV N+L+DMYGKC P+
Sbjct: 65 ISDSKPDNFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPN 124
Query: 362 SASRVFEEMERRNE 403
A +VF+EM NE
Sbjct: 125 DARKVFDEMNYSNE 138
Score = 63.2 bits (152), Expect = 2e-08
Identities = 33/120 (27%), Positives = 67/120 (55%)
Frame = +2
Query: 20 SKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRP 199
S + A A + + A ++F M ++ + WN +++++++ G + + LF +M + +P
Sbjct: 143 SLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHLFKEMCENLYQP 202
Query: 200 DHFSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPSSASRVF 379
D ++F+A +SA ++ E G +H V++ G+ ++M V NS+V Y K A +VF
Sbjct: 203 DQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAKLECHGDAVKVF 262
Score = 61.2 bits (147), Expect = 8e-08
Identities = 33/108 (30%), Positives = 54/108 (50%)
Frame = +2
Query: 26 ITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRPDH 205
I A + G A F + +++IV+W +M+ Y++ G + LF DM+ + + D
Sbjct: 277 IDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIVGYTRNGNGDLALSLFLDMKRNSFQLDD 336
Query: 206 FSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKC 349
A L A A L G+ VH+ ++ G + V NSL++MY KC
Sbjct: 337 LVAGAVLHACASLAILVHGKMVHSCIIHLGLDKYLFVGNSLINMYAKC 384
>ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Glycine max]
Length = 629
Score = 149 bits (376), Expect = 2e-34
Identities = 78/135 (57%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Frame = +2
Query: 5 LYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQI 184
L+ T KI ALARSGQI+ ARKLFDE+ +D V WNAML++YS +G QQ + LF M+I
Sbjct: 5 LFRTTPKIVALARSGQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMRI 64
Query: 185 SGLRPDHFSFTASLSASADAGE--LHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLP 358
S +PD+FSF+A L+A A AG + FG +HALVV GY SS+PV NSL+DMYGKCLLP
Sbjct: 65 SHSKPDNFSFSAVLNACACAGASYVRFGATLHALVVVSGYLSSLPVANSLIDMYGKCLLP 124
Query: 359 SSASRVFEEMERRNE 403
A +VF+E NE
Sbjct: 125 DDARKVFDETSDSNE 139
Score = 73.2 bits (178), Expect = 2e-11
Identities = 39/120 (32%), Positives = 69/120 (57%)
Frame = +2
Query: 20 SKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRP 199
S + A A S ++ A +LF M +R ++ WN M+ +++ G + + LF +M S +P
Sbjct: 144 SLMFAYANSCRLGVALELFRSMPERVVIAWNIMIVGHARRGEVEACLHLFKEMCGSLCQP 203
Query: 200 DHFSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKCLLPSSASRVF 379
D ++F+A ++A A + E+ +G VH V++ G+ S+M V NS++ Y K A +VF
Sbjct: 204 DQWTFSALINACAVSMEMLYGCMVHGFVIKSGWSSAMEVKNSMLSFYAKLECQDDAMKVF 263
Score = 64.3 bits (155), Expect = 1e-08
Identities = 35/108 (32%), Positives = 56/108 (51%)
Frame = +2
Query: 26 ITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQISGLRPDH 205
I A + G A F + +R+IV+W +M++ Y++ G + + +F D+ + ++ D
Sbjct: 278 IDAHMKLGDTQKAFLAFQKAPERNIVSWTSMIAGYTRNGNGELALSMFLDLTRNSVQLDD 337
Query: 206 FSFTASLSASADAGELHFGRKVHALVVRFGYQSSMPVCNSLVDMYGKC 349
A L A A L GR VH ++R G + V NSLV+MY KC
Sbjct: 338 LVAGAVLHACASLAILVHGRMVHGCIIRHGLDKYLYVGNSLVNMYAKC 385
Score = 58.2 bits (139), Expect = 7e-07
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Frame = +2
Query: 5 LYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGFSQQGMELFTDMQI 184
LY S + A+ G I +R F ++ +D+++WN+ML ++ G + + + L+ +M
Sbjct: 372 LYVGNSLVNMYAKCGDIKGSRLAFHDILDKDLISWNSMLFAFGLHGRANEAICLYREMVA 431
Query: 185 SGLRPDHFSFTASLSASADAGELHFG-RKVHALVVRFGYQSSMPVCNSLVDMYGK 346
SG++PD +FT L + G + G ++ + FG M +VDM G+
Sbjct: 432 SGVKPDEVTFTGLLMTCSHLGLISEGFAFFQSMCLEFGLSHGMDHVACMVDMLGR 486