BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031296
         (603 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK39331.1| unknown [Lotus japonicus]                              123   2e-26
ref|XP_002307132.1| predicted protein [Populus trichocarpa] gi|2...   119   5e-25
ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ri...   117   2e-24
ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycin...   116   3e-24
ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II su...   116   3e-24

>gb|AFK39331.1| unknown [Lotus japonicus]
          Length = 83

 Score =  123 bits (309), Expect = 2e-26
 Identities = 59/65 (90%), Positives = 62/65 (95%)
 Frame = -1

Query: 603 LKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYTNPDAVRQVR 424
           LKAKCLMNCEV+LIL+ KYEQLQQ SDDPMNQVSQVFEKSLQYVKRFSRY NPDAVRQVR
Sbjct: 19  LKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR 78

Query: 423 EYPSN 409
           EYP+N
Sbjct: 79  EYPAN 83


>ref|XP_002307132.1| predicted protein [Populus trichocarpa]
           gi|224096326|ref|XP_002310604.1| predicted protein
           [Populus trichocarpa] gi|222853507|gb|EEE91054.1|
           predicted protein [Populus trichocarpa]
           gi|222856581|gb|EEE94128.1| predicted protein [Populus
           trichocarpa]
          Length = 138

 Score =  119 bits (297), Expect = 5e-25
 Identities = 58/61 (95%), Positives = 59/61 (96%)
 Frame = -1

Query: 603 LKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYTNPDAVRQVR 424
           LKAKCLMNCEVALIL+ KYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRY NPDAVRQVR
Sbjct: 19  LKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR 78

Query: 423 E 421
           E
Sbjct: 79  E 79


>ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 138

 Score =  117 bits (292), Expect = 2e-24
 Identities = 57/61 (93%), Positives = 59/61 (96%)
 Frame = -1

Query: 603 LKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYTNPDAVRQVR 424
           LKAKCLMNCEVALIL+ KYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRY NPDAVRQVR
Sbjct: 19  LKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR 78

Query: 423 E 421
           E
Sbjct: 79  E 79


>ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
           gi|255632992|gb|ACU16850.1| unknown [Glycine max]
          Length = 195

 Score =  116 bits (291), Expect = 3e-24
 Identities = 57/61 (93%), Positives = 58/61 (95%)
 Frame = -1

Query: 603 LKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYTNPDAVRQVR 424
           LKAKCLMNCEVALIL+ KYEQLQQ SDDPMNQVSQVFEKSLQYVKRFSRY NPDAVRQVR
Sbjct: 19  LKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR 78

Query: 423 E 421
           E
Sbjct: 79  E 79


>ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
           vinifera] gi|147856183|emb|CAN80281.1| hypothetical
           protein VITISV_017448 [Vitis vinifera]
           gi|302143481|emb|CBI22042.3| unnamed protein product
           [Vitis vinifera]
          Length = 138

 Score =  116 bits (291), Expect = 3e-24
 Identities = 56/61 (91%), Positives = 59/61 (96%)
 Frame = -1

Query: 603 LKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQYVKRFSRYTNPDAVRQVR 424
           LKAKCLMNCEVA+IL+ KYEQLQQMSDDP+NQVSQVFEKSLQYVKRFSRY NPDAVRQVR
Sbjct: 19  LKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR 78

Query: 423 E 421
           E
Sbjct: 79  E 79