BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031257
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi...    75   6e-12
ref|XP_002308636.1| predicted protein [Populus trichocarpa] gi|2...    71   8e-11
ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi...    67   1e-09
ref|XP_002516618.1| pentatricopeptide repeat-containing protein,...    64   2e-08

>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
           gi|296081989|emb|CBI20994.3| unnamed protein product
           [Vitis vinifera]
          Length = 597

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 35/62 (56%), Positives = 45/62 (72%)
 Frame = -2

Query: 187 GIQPGPNLLLTIFKQFESSPKPLFTLFKWAVKQPSYCSTAPVLNLIIDLLGKSRDFHSAW 8
           GI+P   LL  IF  F++SPKPLFTLF+WA+KQP + S+  + N +ID+L KSR F SAW
Sbjct: 98  GIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFESSMTLFNSMIDVLAKSRAFDSAW 157

Query: 7   SL 2
            L
Sbjct: 158 LL 159


>ref|XP_002308636.1| predicted protein [Populus trichocarpa] gi|222854612|gb|EEE92159.1|
           predicted protein [Populus trichocarpa]
          Length = 607

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
 Frame = -2

Query: 382 RHFSTHQSS-SWLSSPGNPLIKWXXXXXXXXXXXXXXXXPENT--------------VYN 248
           RHFS   S+ SWL+  GNPLIKW                   T              + N
Sbjct: 28  RHFSAVSSAESWLAVQGNPLIKWPHNPNLAPSPSADQQNSSPTSNSNPNYHQNDFFTLCN 87

Query: 247 XXXXXXXXXXXXXXXXXXXTGIQPGPNLLLTIFKQFESSPKPLFTLFKWAVKQPSYCSTA 68
                              TGI+P   L+ ++F  F+SSPK L ++F WA K+P + S+A
Sbjct: 88  ILKDPKIQLGPSLRTALDRTGIEPELGLIQSVFDHFDSSPKLLHSVFLWAEKKPGFQSSA 147

Query: 67  PVLNLIIDLLGKSRDFHSAWSL 2
            + N +++ LGK+R+F SAW L
Sbjct: 148 ALFNSMVNFLGKAREFGSAWCL 169


>ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
 Frame = -2

Query: 373 STHQ--SSSWLSSPGNPLIKWXXXXXXXXXXXXXXXXPEN--------------TVYNXX 242
           STH+  SSSWLS PGNP+I+W                  N               + N  
Sbjct: 41  STHRPFSSSWLSEPGNPIIQWPSLPPPKPTPNPNPNPNLNPTPDPPSPNPNALSVISNLF 100

Query: 241 XXXXXXXXXXXXXXXXXTGIQPGPNLLLTIFKQFESSPKPLFTLFKWAVKQPSYCSTAPV 62
                             GI+P P LLL +F +F SSPK L +LF WA  +P++     +
Sbjct: 101 ADPSLSPGPALHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPAFRPGPKL 160

Query: 61  LNLIIDLLGKSRDFHSAWSL 2
            + +++ L K+R+F +AW L
Sbjct: 161 FDAVVNALAKAREFDAAWKL 180


>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
           gi|449503560|ref|XP_004162063.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
 Frame = -2

Query: 376 FSTHQSSSWLSSPGNPLIKWXXXXXXXXXXXXXXXXPEN--------------------T 257
           FS+    SWLS+PG PL+KW                  +                    T
Sbjct: 32  FSSLSPHSWLSTPGKPLVKWPSLPDQPANPLPSNSAVISNPNSAIDVKFEASYSPNDLST 91

Query: 256 VYNXXXXXXXXXXXXXXXXXXXTGIQPGPNLLLTIFKQFESSPKPLFTLFKWAVKQPSYC 77
           + +                   TGI P  +LL  +F  F+SSPK L +LF WA K+  + 
Sbjct: 92  ISSILSDRSVRPGAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFR 151

Query: 76  STAPVLNLIIDLLGKSRDFHSAWSL 2
            +A + N +I++L KSR+F SAWSL
Sbjct: 152 PSAALFNRLINVLAKSREFDSAWSL 176


>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 577

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 30/62 (48%), Positives = 41/62 (66%)
 Frame = -2

Query: 187 GIQPGPNLLLTIFKQFESSPKPLFTLFKWAVKQPSYCSTAPVLNLIIDLLGKSRDFHSAW 8
           GI+P  +LL  +F  F SSPK L +LF WA KQP + S+  + N +I+ LGK ++F SAW
Sbjct: 84  GIKPETSLLNAVFDHFNSSPKLLHSLFVWADKQPEFESSTTLFNSVINALGKMKEFDSAW 143

Query: 7   SL 2
            L
Sbjct: 144 CL 145