BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031154
         (501 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525321.1| glycine-rich RNA-binding protein, putative [...   161   4e-38
ref|XP_004151901.1| PREDICTED: glycine-rich RNA-binding protein ...   160   1e-37
ref|XP_002273998.1| PREDICTED: glycine-rich RNA-binding protein ...   156   1e-36
ref|NP_187457.1| RNA recognition motif-containing protein [Arabi...   155   3e-36
ref|XP_003528518.1| PREDICTED: glycine-rich RNA-binding protein ...   154   5e-36

>ref|XP_002525321.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
           gi|223535380|gb|EEF37054.1| glycine-rich RNA-binding
           protein, putative [Ricinus communis]
          Length = 126

 Score =  161 bits (408), Expect = 4e-38
 Identities = 79/104 (75%), Positives = 94/104 (90%)
 Frame = +3

Query: 63  STSSLVNNKLFVGGLSWAVDEKSLKEAFSSFGQVTEVRIVYDKDSGRSKGFGFVHFAKDE 242
           S S   N+KLFV GLSW+VDEKSLK+AFSSFG+V+EVRI+YDKDSGRS+GFGFV+F+K+ 
Sbjct: 18  SPSPPPNSKLFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGFGFVNFSKEN 77

Query: 243 DAGSAKDAMDGKAMLGRPLRISFAVEKVRGGPLVVPRLSSVRNN 374
           +A  AKDAMDGKA+LGRPLRISFA+EKVRGGP+VVPRLSS  +N
Sbjct: 78  EAVCAKDAMDGKALLGRPLRISFALEKVRGGPIVVPRLSSAGDN 121


>ref|XP_004151901.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Cucumis sativus] gi|449522522|ref|XP_004168275.1|
           PREDICTED: glycine-rich RNA-binding protein 2,
           mitochondrial-like [Cucumis sativus]
          Length = 145

 Score =  160 bits (405), Expect = 1e-37
 Identities = 78/103 (75%), Positives = 92/103 (89%)
 Frame = +3

Query: 63  STSSLVNNKLFVGGLSWAVDEKSLKEAFSSFGQVTEVRIVYDKDSGRSKGFGFVHFAKDE 242
           S+S   NNKLFV GLSW++DE+SLK+AFSSFG+VTEVRIVYDKDSGRS+GFGFV+FA   
Sbjct: 37  SSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGN 96

Query: 243 DAGSAKDAMDGKAMLGRPLRISFAVEKVRGGPLVVPRLSSVRN 371
           DA  AKDAMDGKA+LGRPLRISFA++KVRG P+VVPRLS++ N
Sbjct: 97  DAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINN 139


>ref|XP_002273998.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial [Vitis
           vinifera] gi|297739201|emb|CBI28852.3| unnamed protein
           product [Vitis vinifera]
          Length = 140

 Score =  156 bits (395), Expect = 1e-36
 Identities = 77/105 (73%), Positives = 90/105 (85%), Gaps = 5/105 (4%)
 Frame = +3

Query: 54  RCYSTSSLV-----NNKLFVGGLSWAVDEKSLKEAFSSFGQVTEVRIVYDKDSGRSKGFG 218
           RC+ +S        N KLFV GLSW+VDEKSLK+AFSSFG VTEVRI+YDKDSGRS+GFG
Sbjct: 23  RCFCSSPSFPTPPSNTKLFVAGLSWSVDEKSLKDAFSSFGDVTEVRIMYDKDSGRSRGFG 82

Query: 219 FVHFAKDEDAGSAKDAMDGKAMLGRPLRISFAVEKVRGGPLVVPR 353
           FV+F+K+ DA SAKDAMDGKA LGRPLR+S+A+EKVRGGP+VVPR
Sbjct: 83  FVYFSKEVDARSAKDAMDGKAFLGRPLRVSYALEKVRGGPIVVPR 127


>ref|NP_187457.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|6648212|gb|AAF21210.1|AC013483_34 putative
           RNA-binding protein [Arabidopsis thaliana]
           gi|45752630|gb|AAS76213.1| At3g08000 [Arabidopsis
           thaliana] gi|46359799|gb|AAS88763.1| At3g08000
           [Arabidopsis thaliana] gi|332641108|gb|AEE74629.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 143

 Score =  155 bits (392), Expect = 3e-36
 Identities = 79/124 (63%), Positives = 102/124 (82%), Gaps = 9/124 (7%)
 Frame = +3

Query: 12  LVIRRILA------NNNYH---SRCYSTSSLVNNKLFVGGLSWAVDEKSLKEAFSSFGQV 164
           L++RR+ A      ++++H     C S+S+  ++KLF+GGLSW+VDE+SLK+AFSSFG+V
Sbjct: 8   LLVRRVSAIPQHSISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEV 67

Query: 165 TEVRIVYDKDSGRSKGFGFVHFAKDEDAGSAKDAMDGKAMLGRPLRISFAVEKVRGGPLV 344
            EVRI YDK SGRS+GFGFV FA++ DA SAKDAMDGK +LGRPLRISFA+E+VRGGP+V
Sbjct: 68  AEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVV 127

Query: 345 VPRL 356
           VPRL
Sbjct: 128 VPRL 131


>ref|XP_003528518.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Glycine max]
          Length = 137

 Score =  154 bits (390), Expect = 5e-36
 Identities = 76/103 (73%), Positives = 87/103 (84%)
 Frame = +3

Query: 57  CYSTSSLVNNKLFVGGLSWAVDEKSLKEAFSSFGQVTEVRIVYDKDSGRSKGFGFVHFAK 236
           C   S   +NKLFVGGLSW+VD KSLKEAFSSFG VTEV IVYDKDSGRS+GFGFV F+ 
Sbjct: 29  CSPPSHASSNKLFVGGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSN 88

Query: 237 DEDAGSAKDAMDGKAMLGRPLRISFAVEKVRGGPLVVPRLSSV 365
           ++DA  AKDAMDGKA+LGRPLRI+FA+EK RG P+VVPRLS +
Sbjct: 89  EDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDI 131