BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031133
         (756 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]   219   4e-55
ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi...   218   1e-54
ref|XP_002515265.1| pentatricopeptide repeat-containing protein,...   206   6e-51
ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|2...   200   3e-49
ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   197   2e-48

>emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
          Length = 494

 Score =  219 bits (559), Expect = 4e-55
 Identities = 106/215 (49%), Positives = 151/215 (70%), Gaps = 2/215 (0%)
 Frame = -1

Query: 753 YSHTSNNLGVDRVWGSLKSAFPELTNMCYLSKLQALHRLGDTDGLKKCFDDWESGCSNYD 574
           Y+ TSN  GV+R W SLK A P++ N  YL  L AL +LGD  GL+KCF +WESGCS YD
Sbjct: 279 YARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYD 338

Query: 573 IKLVNVLIDSYLSRGMIPEAEALLEHAVRKVGKPSFRTLEMFMNFYLRKCQLDSALKYLK 394
           ++L NV+++SYL+R MI EA  L E   ++  +   +TL++FM FYL+K QLD A+KYL 
Sbjct: 339 VRLSNVMLESYLNREMIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLD 398

Query: 393 TAASMKN--EYEWKPSQDVVDMFLRYLEEEKNVDGAESLFKSLKKLNSVSTEVYDSLLRT 220
             AS  +    +W P+++ + MFL Y EE K+VD AE   ++++K++ + +++YDSLLRT
Sbjct: 399 MGASKADPENNKWFPTEETITMFLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRT 458

Query: 219 YVAAGKKDPEMRKRMKEDGIEASPSSRTLIGKVCP 115
           Y+AAGK++P M +RMK+DGIE S  +  L+ KVCP
Sbjct: 459 YIAAGKEEPLMSERMKDDGIEISSETEKLLQKVCP 493


>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial [Vitis vinifera]
           gi|296089781|emb|CBI39600.3| unnamed protein product
           [Vitis vinifera]
          Length = 498

 Score =  218 bits (555), Expect = 1e-54
 Identities = 105/215 (48%), Positives = 151/215 (70%), Gaps = 2/215 (0%)
 Frame = -1

Query: 753 YSHTSNNLGVDRVWGSLKSAFPELTNMCYLSKLQALHRLGDTDGLKKCFDDWESGCSNYD 574
           Y+ TSN  GV+R W SLK A P++ N  YL  L AL +LGD  GL+KCF +WESGCS YD
Sbjct: 283 YARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYD 342

Query: 573 IKLVNVLIDSYLSRGMIPEAEALLEHAVRKVGKPSFRTLEMFMNFYLRKCQLDSALKYLK 394
           ++L NV+++SYL+R +I EA  L E   ++  +   +TL++FM FYL+K QLD A+KYL 
Sbjct: 343 VRLSNVMLESYLNREIIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLD 402

Query: 393 TAASMKN--EYEWKPSQDVVDMFLRYLEEEKNVDGAESLFKSLKKLNSVSTEVYDSLLRT 220
             AS  +    +W P+++ + MFL Y EE K+VD AE   ++++K++ + +++YDSLLRT
Sbjct: 403 MGASKADPENNKWFPTEETITMFLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRT 462

Query: 219 YVAAGKKDPEMRKRMKEDGIEASPSSRTLIGKVCP 115
           Y+AAGK++P M +RMK+DGIE S  +  L+ KVCP
Sbjct: 463 YIAAGKEEPLMSERMKDDGIEISSETEKLLQKVCP 497


>ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545745|gb|EEF47249.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  206 bits (523), Expect = 6e-51
 Identities = 100/213 (46%), Positives = 142/213 (66%)
 Frame = -1

Query: 753 YSHTSNNLGVDRVWGSLKSAFPELTNMCYLSKLQALHRLGDTDGLKKCFDDWESGCSNYD 574
           Y+ T N+  V+RVWG LKS+F  + N+ YL  LQAL +L D +G+ KCF +WESGC+NYD
Sbjct: 291 YAGTGNSNEVNRVWGLLKSSFNMINNLSYLVMLQALAKLKDVEGVAKCFREWESGCTNYD 350

Query: 573 IKLVNVLIDSYLSRGMIPEAEALLEHAVRKVGKPSFRTLEMFMNFYLRKCQLDSALKYLK 394
           +++ NV I  +L   M  EAE + + A+++   P F+  E FM F+L+  QLD ALK+++
Sbjct: 351 MRIANVAIRVFLQHDMYEEAELIFDDALKRTRGPFFKARERFMLFFLKIHQLDLALKHMR 410

Query: 393 TAASMKNEYEWKPSQDVVDMFLRYLEEEKNVDGAESLFKSLKKLNSVSTEVYDSLLRTYV 214
            A S   ++EWKP Q+ V+ +  Y   EK+VDGAE L K LK +N +++ VY  LL+TY+
Sbjct: 411 AAFSESEKHEWKPLQETVNAYFDYFRTEKDVDGAEKLSKILKHINCLNSSVYSLLLKTYI 470

Query: 213 AAGKKDPEMRKRMKEDGIEASPSSRTLIGKVCP 115
           AAGK  PEMR+R++ED IE S     L+  VCP
Sbjct: 471 AAGKLAPEMRQRLEEDNIEISDELEYLLESVCP 503


>ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|222861744|gb|EEE99286.1|
           predicted protein [Populus trichocarpa]
          Length = 473

 Score =  200 bits (508), Expect = 3e-49
 Identities = 101/213 (47%), Positives = 136/213 (63%)
 Frame = -1

Query: 753 YSHTSNNLGVDRVWGSLKSAFPELTNMCYLSKLQALHRLGDTDGLKKCFDDWESGCSNYD 574
           Y+ TSN   V+RVW SLKS F   TN+ YL+ L  L +L D +GL KCF +WES C +YD
Sbjct: 261 YAGTSNLGEVNRVWNSLKSNFHTTTNVSYLTMLHTLAKLKDVEGLLKCFKEWESSCHSYD 320

Query: 573 IKLVNVLIDSYLSRGMIPEAEALLEHAVRKVGKPSFRTLEMFMNFYLRKCQLDSALKYLK 394
           ++L NV I + L   M  EA  + + A+++     F   EMFM F+L+  QLD ALK++K
Sbjct: 321 MRLANVAIRACLEHDMYEEAALIFDDALKRTEGLFFNAREMFMVFFLKNHQLDLALKHMK 380

Query: 393 TAASMKNEYEWKPSQDVVDMFLRYLEEEKNVDGAESLFKSLKKLNSVSTEVYDSLLRTYV 214
            A S   E EW+P    V  F  Y E+EK+V+GAE L K LK +N + +  YD LL+TY+
Sbjct: 381 AAFSEVKEIEWQPEPKTVSAFFAYFEDEKDVNGAERLCKILKHINRLDSNAYDLLLKTYI 440

Query: 213 AAGKKDPEMRKRMKEDGIEASPSSRTLIGKVCP 115
           AAGK  PEMR+R++EDGIE +P    L+ +VCP
Sbjct: 441 AAGKLAPEMRQRLEEDGIEINPELENLLERVCP 473


>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  197 bits (501), Expect = 2e-48
 Identities = 99/213 (46%), Positives = 143/213 (67%)
 Frame = -1

Query: 753 YSHTSNNLGVDRVWGSLKSAFPELTNMCYLSKLQALHRLGDTDGLKKCFDDWESGCSNYD 574
           Y+  +N   V+RVW SLKSAFP+  NM Y   LQAL  L D DGLK CF++W+S C ++D
Sbjct: 295 YAGINNLSEVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFD 354

Query: 573 IKLVNVLIDSYLSRGMIPEAEALLEHAVRKVGKPSFRTLEMFMNFYLRKCQLDSALKYLK 394
           ++L NV + ++L   MI +AE++L  AV++   P +  L+MFM  +L+  ++D+ALKY++
Sbjct: 355 VRLANVAVRAFLGWDMIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYME 414

Query: 393 TAASMKNEYEWKPSQDVVDMFLRYLEEEKNVDGAESLFKSLKKLNSVSTEVYDSLLRTYV 214
            AAS     EW+P+ + V  FL+Y EEEK+V+GAE   K LK ++ + +  Y  LL+T V
Sbjct: 415 AAASEVKNNEWQPAPERVLAFLKYFEEEKDVEGAEKFCKILKNISGLDSNAYQLLLQTXV 474

Query: 213 AAGKKDPEMRKRMKEDGIEASPSSRTLIGKVCP 115
           AAG+ +PEMRKRMKED IE    S+ L+ +V P
Sbjct: 475 AAGRTEPEMRKRMKEDDIEV--DSKDLLQRVGP 505