BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031076
         (477 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...   216   1e-54
emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]   216   1e-54
ref|XP_002512699.1| pentatricopeptide repeat-containing protein,...   208   3e-52
ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|2...   198   4e-49
ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containi...   193   1e-47

>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score =  216 bits (551), Expect = 1e-54
 Identities = 104/158 (65%), Positives = 126/158 (79%)
 Frame = +3

Query: 3   SKDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKE 182
           SKDVISWT IF  YVKNG FNE LKLFR M+ +G KPDS+++S +LPAC R AA K GKE
Sbjct: 257 SKDVISWTEIFRGYVKNGGFNEGLKLFRQMSMEGVKPDSLAISSILPACGRGAAHKQGKE 316

Query: 183 IHAYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGH 362
           IHAY +RNG+D  + VQNA++DMY+KSGF+ESA+KIF  M+++D IS TVMILGYSLHG 
Sbjct: 317 IHAYLLRNGIDLNVTVQNAVLDMYVKSGFIESAAKIFAGMKDRDAISWTVMILGYSLHGQ 376

Query: 363 GEIGVGLFHKMKKNLNFEIDDVTYDALLRACRTARMVE 476
           GE+GV LF KM+KN + EID + Y A L AC TAR+VE
Sbjct: 377 GELGVDLFRKMEKNSSVEIDQIAYAAALHACTTARLVE 414



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 42/150 (28%), Positives = 79/150 (52%)
 Frame = +3

Query: 6   KDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKEI 185
           ++ +SWT I   Y+   +   A+ +F+ M    ++ D ++L   + AC  + + + G+ +
Sbjct: 157 RNSVSWTLISRLYIMEDKPGLAVDMFKQMVESKSEIDPLALVTAIVACGMLKSLQEGRYV 216

Query: 186 HAYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGHG 365
           H    + GL+ ++ V N+L+ MY+  G ++ A  +F +M  KDVIS T +  GY  +G  
Sbjct: 217 HEIAKKCGLEADVLVSNSLLKMYIDCGSIKDARAVFDRMPSKDVISWTEIFRGYVKNGGF 276

Query: 366 EIGVGLFHKMKKNLNFEIDDVTYDALLRAC 455
             G+ LF +M      + D +   ++L AC
Sbjct: 277 NEGLKLFRQMSME-GVKPDSLAISSILPAC 305



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/149 (22%), Positives = 76/149 (51%)
 Frame = +3

Query: 9   DVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKEIH 188
           +  +W  +   ++ NG+ +  +  +R M  +G +PD  ++  +L A    ++   GK++H
Sbjct: 57  NTFAWNNLIQTHLTNGDSDRVVSTYRQMLLRGVRPDKHTIPRILTAARHTSSFSFGKQVH 116

Query: 189 AYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGHGE 368
            + ++ GL  E  V +AL++MY +     +A  +F +   ++ +S T++   Y +     
Sbjct: 117 GHALKLGLSSESYVISALLEMYGRLDGANAAKLVFCKSARRNSVSWTLISRLYIMEDKPG 176

Query: 369 IGVGLFHKMKKNLNFEIDDVTYDALLRAC 455
           + V +F +M ++ + EID +     + AC
Sbjct: 177 LAVDMFKQMVESKS-EIDPLALVTAIVAC 204


>emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]
          Length = 734

 Score =  216 bits (551), Expect = 1e-54
 Identities = 104/158 (65%), Positives = 126/158 (79%)
 Frame = +3

Query: 3   SKDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKE 182
           SKDVISWT IF  YVKNG FNE LKLFR M+ +G KPDS+++S +LPAC R AA K GKE
Sbjct: 329 SKDVISWTEIFRGYVKNGGFNEGLKLFRQMSMEGVKPDSLAISSILPACGRGAAHKQGKE 388

Query: 183 IHAYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGH 362
           IHAY +RNG+D  + VQNA++DMY+KSGF+ESA+KIF  M+++D IS TVMILGYSLHG 
Sbjct: 389 IHAYLLRNGIDLNVTVQNAVLDMYVKSGFIESAAKIFAGMKDRDAISWTVMILGYSLHGQ 448

Query: 363 GEIGVGLFHKMKKNLNFEIDDVTYDALLRACRTARMVE 476
           GE+GV LF KM+KN + EID + Y A L AC TAR+VE
Sbjct: 449 GELGVDLFRKMEKNSSVEIDQIAYAAALHACTTARLVE 486



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/149 (22%), Positives = 76/149 (51%)
 Frame = +3

Query: 9   DVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKEIH 188
           +  +W  +   ++ NG+    +  +R M  +G +PD  ++  +L A    ++   GK++H
Sbjct: 152 NTFAWNNLIQTHLTNGDSGRVVSTYRQMLLRGVRPDKHTIPRILTAARHTSSFSFGKQVH 211

Query: 189 AYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGHGE 368
            + ++ GL  E  V +AL++MY +    ++A  +F +   ++ +S T++   Y +     
Sbjct: 212 GHALKLGLSSESYVISALLEMYGRLDGABAAKLVFCKSARRNSVSWTLISRLYIMEDKPG 271

Query: 369 IGVGLFHKMKKNLNFEIDDVTYDALLRAC 455
           + V +F +M ++ + EID +     + AC
Sbjct: 272 LAVDMFKQMVESKS-EIDPLALVTAIVAC 299


>ref|XP_002512699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548660|gb|EEF50151.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 686

 Score =  208 bits (530), Expect = 3e-52
 Identities = 104/158 (65%), Positives = 128/158 (81%)
 Frame = +3

Query: 3   SKDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKE 182
           +KD+ISWT I + YVK GEFNEALKLFR MN  G +PDS+SLS +LPACAR AA K G+E
Sbjct: 261 TKDIISWTEIINGYVKIGEFNEALKLFRQMNIAGIRPDSLSLSTILPACARPAAHKLGRE 320

Query: 183 IHAYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGH 362
           IHAY +RNG++  L +QNAL+DMY+KSGF+ESAS IFV+M+EKDVIS TVMILG+SLHG 
Sbjct: 321 IHAYLLRNGIELNLMLQNALIDMYVKSGFMESASLIFVRMKEKDVISWTVMILGFSLHGQ 380

Query: 363 GEIGVGLFHKMKKNLNFEIDDVTYDALLRACRTARMVE 476
           GE+GV LF +++K+ + EID   Y A+LR C TA MVE
Sbjct: 381 GELGVELFRRLEKDPSIEIDQYIYAAVLRCCTTACMVE 418



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 46/151 (30%), Positives = 75/151 (49%)
 Frame = +3

Query: 3   SKDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKE 182
           SK+ +SWT +   Y+   + +  L LF  M    +  D V+L+  L AC  + +  +GK 
Sbjct: 160 SKNSVSWTVLARLYLMQNKPDVVLSLFYQMLDFNSLFDPVALATALRACGMLRSMHHGKI 219

Query: 183 IHAYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGH 362
           +H +  +  L+ ++ V N+L+ MY+    +E A   F QM  KD+IS T +I GY   G 
Sbjct: 220 LHGFAKKCRLEFDILVSNSLLKMYVDCHCIEDARATFHQMPTKDIISWTEIINGYVKIGE 279

Query: 363 GEIGVGLFHKMKKNLNFEIDDVTYDALLRAC 455
               + LF +M        D ++   +L AC
Sbjct: 280 FNEALKLFRQM-NIAGIRPDSLSLSTILPAC 309



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 41/153 (26%), Positives = 70/153 (45%)
 Frame = +3

Query: 9   DVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKEIH 188
           D  +W  + H ++ N +   AL ++  M  +G  PD  +   VL A         GK+IH
Sbjct: 61  DTFAWNNLIHSHLTNRDPFSALSIYLHMLLRGALPDRRTFPRVLNASRLSTNLFLGKQIH 120

Query: 189 AYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGHGE 368
           A  ++ G   +  V ++L+D Y      ++A  +F     K+ +S TV+   Y +    +
Sbjct: 121 AQALKFGFSSDPYVISSLIDFYGHLDSTDAARSLFDNSPSKNSVSWTVLARLYLMQNKPD 180

Query: 369 IGVGLFHKMKKNLNFEIDDVTYDALLRACRTAR 467
           + + LF++M  + N   D V     LRAC   R
Sbjct: 181 VVLSLFYQM-LDFNSLFDPVALATALRACGMLR 212


>ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|222841170|gb|EEE78717.1|
           predicted protein [Populus trichocarpa]
          Length = 663

 Score =  198 bits (503), Expect = 4e-49
 Identities = 99/158 (62%), Positives = 118/158 (74%)
 Frame = +3

Query: 3   SKDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKE 182
           +KDVISWT I   YVK GEFNEALKLFR MN  G KPDS+S+S VLPACAR  A KNGKE
Sbjct: 258 TKDVISWTEIICGYVKKGEFNEALKLFRKMNMDGIKPDSLSVSSVLPACARTVAHKNGKE 317

Query: 183 IHAYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGH 362
           IH Y++RNG+D  L VQNA  DMY KSG ++ A K+F +M+++DVIS TVMILG+SLHG 
Sbjct: 318 IHGYSLRNGMDNNLIVQNATTDMYAKSGLVDYALKVFERMKKRDVISWTVMILGFSLHGK 377

Query: 363 GEIGVGLFHKMKKNLNFEIDDVTYDALLRACRTARMVE 476
           GE+GV LF +M+K+   E D  TY A+L  C  A MVE
Sbjct: 378 GELGVELFCRMEKDQRVEADQFTYAAVLHCCTAACMVE 415



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 43/150 (28%), Positives = 75/150 (50%)
 Frame = +3

Query: 6   KDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKEI 185
           ++ ++WT I   Y+   + + A+ +F  M     + DSV L     AC  + + ++G+ +
Sbjct: 158 RNSVAWTMILKLYLMENKPDLAINVFYQMVELNARIDSVVLITAAGACGLLKSVEHGRRV 217

Query: 186 HAYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGHG 365
           H    +  L+ ++ V N+L+ M +    +E A   F QM  KDVIS T +I GY   G  
Sbjct: 218 HDVARKFRLESDILVSNSLLKMQIDCQRMEDARGFFNQMTTKDVISWTEIICGYVKKGEF 277

Query: 366 EIGVGLFHKMKKNLNFEIDDVTYDALLRAC 455
              + LF KM  +   + D ++  ++L AC
Sbjct: 278 NEALKLFRKMNMD-GIKPDSLSVSSVLPAC 306



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 39/156 (25%), Positives = 75/156 (48%)
 Frame = +3

Query: 9   DVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKEIH 188
           D  +W  + H ++ N +   AL ++  M  +G  PD  +L  VL A         GK++H
Sbjct: 58  DTFAWNNLIHTHLSNRDPGGALSIYHHMMMRGACPDRRTLPRVLTASRICGDLFLGKQLH 117

Query: 189 AYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGHGE 368
              I+ G   E  V  AL+++Y +   +E+   +F +   ++ ++ T+++  Y +    +
Sbjct: 118 GQAIKLGFFDEHYVITALIEIYGRLDGIEAGKWLFDKSPRRNSVAWTMILKLYLMENKPD 177

Query: 369 IGVGLFHKMKKNLNFEIDDVTYDALLRACRTARMVE 476
           + + +F++M + LN  ID V       AC   + VE
Sbjct: 178 LAINVFYQMVE-LNARIDSVVLITAAGACGLLKSVE 212


>ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 429

 Score =  193 bits (491), Expect = 1e-47
 Identities = 91/159 (57%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   SKDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGT-KPDSVSLSGVLPACARIAAGKNGK 179
           SKD+ISWT + H YVK G  NEA KLFR MN  G  KPD  ++S +LPAC R+AA K+GK
Sbjct: 223 SKDIISWTELIHMYVKKGGINEAFKLFRQMNMDGELKPDPRTISSILPACGRMAAHKHGK 282

Query: 180 EIHAYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHG 359
           EIH Y ++N  D+ L VQNAL+DMY+KSG ++SASK F  M+EKD++S ++M LGYSLHG
Sbjct: 283 EIHGYVVKNAFDENLIVQNALVDMYVKSGCIQSASKTFSMMKEKDMVSWSIMTLGYSLHG 342

Query: 360 HGEIGVGLFHKMKKNLNFEIDDVTYDALLRACRTARMVE 476
            G++GV LF +M+KN     D++TY A+L AC TA MV+
Sbjct: 343 QGKLGVSLFREMEKNFKMRRDEITYTAVLHACTTANMVD 381



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 44/150 (29%), Positives = 74/150 (49%)
 Frame = +3

Query: 6   KDVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKEI 185
           ++ +SWT +   Y++  + + AL LF  M       D+V+L+  + AC  +    +G+ I
Sbjct: 123 RNSVSWTVLAKLYLREDKPSLALDLFYQMVELADDIDAVALATAIGACGALKMLHHGRNI 182

Query: 186 HAYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGHG 365
           H     +GL+  + V N+L+ MY+    ++ A   F QM  KD+IS T +I  Y   G  
Sbjct: 183 HHLARVHGLEFNILVSNSLLKMYIDCDSIKDARGFFDQMPSKDIISWTELIHMYVKKGGI 242

Query: 366 EIGVGLFHKMKKNLNFEIDDVTYDALLRAC 455
                LF +M  +   + D  T  ++L AC
Sbjct: 243 NEAFKLFRQMNMDGELKPDPRTISSILPAC 272



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 35/155 (22%), Positives = 73/155 (47%)
 Frame = +3

Query: 9   DVISWTAIFHWYVKNGEFNEALKLFRLMNSQGTKPDSVSLSGVLPACARIAAGKNGKEIH 188
           D  +W  +   ++ NG+    +  +R M  +G +PD  +L  ++ A  +    + GK++H
Sbjct: 23  DTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVRPDKHTLPRIICATRQYGDLQVGKQLH 82

Query: 189 AYTIRNGLDKELAVQNALMDMYMKSGFLESASKIFVQMREKDVISLTVMILGYSLHGHGE 368
           A   + G    L V  +L+++Y      ++A  +  +   ++ +S TV+   Y       
Sbjct: 83  AQAFKLGFSSNLYVLTSLIELYGILDSADTAKWLHDKSTCRNSVSWTVLAKLYLREDKPS 142

Query: 369 IGVGLFHKMKKNLNFEIDDVTYDALLRACRTARMV 473
           + + LF++M + L  +ID V     + AC   +M+
Sbjct: 143 LALDLFYQMVE-LADDIDAVALATAIGACGALKML 176