BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031043
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containi...   160   1e-37
ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containi...   150   1e-34
ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containi...   147   9e-34
ref|XP_003626823.1| Pentatricopeptide repeat-containing protein ...   144   6e-33
ref|XP_003596871.1| Pentatricopeptide repeat-containing protein ...   143   1e-32

>ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 313

 Score =  160 bits (405), Expect = 1e-37
 Identities = 76/108 (70%), Positives = 89/108 (82%)
 Frame = +3

Query: 3   VLKSCAGLSSLHLGRRLHVVVFVNGFSYDVATCNALISMYCKCGDLVMARKVFDGMAMRN 182
           VLKSC+GLS+L LGR++H  V  NG + D+AT NALISMY KCGDL  ARKVFD M  RN
Sbjct: 114 VLKSCSGLSALRLGRQVHCAVVANGLASDLATINALISMYSKCGDLAAARKVFDRMTERN 173

Query: 183 LITWSAMIAGYGMHGFSSEVFKLFEEMLDAGESPDGVTFTAILAACSH 326
           L+TWSAM+AGYG+HG   EVF+LF+ M+DAGE PDGVTFTA+LAACSH
Sbjct: 174 LVTWSAMMAGYGVHGVFGEVFELFDGMVDAGEVPDGVTFTAVLAACSH 221


>ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 315

 Score =  150 bits (378), Expect = 1e-34
 Identities = 72/108 (66%), Positives = 88/108 (81%)
 Frame = +3

Query: 3   VLKSCAGLSSLHLGRRLHVVVFVNGFSYDVATCNALISMYCKCGDLVMARKVFDGMAMRN 182
           VLKSCAGLS+L LG+++H  V VNGF  D+A  NALI+MY KCG LV ARK+FD M  RN
Sbjct: 115 VLKSCAGLSALRLGQQVHGAVLVNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRN 174

Query: 183 LITWSAMIAGYGMHGFSSEVFKLFEEMLDAGESPDGVTFTAILAACSH 326
            IT+S M+AGYGMHG   EVF+LF++M++AGE PDGVTFTA+L+ACSH
Sbjct: 175 EITFSTMMAGYGMHGKCGEVFELFDKMVEAGERPDGVTFTAVLSACSH 222


>ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449515851|ref|XP_004164961.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 308

 Score =  147 bits (371), Expect = 9e-34
 Identities = 67/108 (62%), Positives = 87/108 (80%)
 Frame = +3

Query: 3   VLKSCAGLSSLHLGRRLHVVVFVNGFSYDVATCNALISMYCKCGDLVMARKVFDGMAMRN 182
           VLKSC GLSSL LGR++H  + +NGFS D+ + NALI+MY KCGDL +ARKVFDGM  RN
Sbjct: 115 VLKSCTGLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERN 174

Query: 183 LITWSAMIAGYGMHGFSSEVFKLFEEMLDAGESPDGVTFTAILAACSH 326
            ++WSA++AGYG+HG   EVF+LFE M++ G+ PD +TFT++L ACSH
Sbjct: 175 EVSWSALMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSH 222


>ref|XP_003626823.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355520845|gb|AET01299.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 355

 Score =  144 bits (364), Expect = 6e-33
 Identities = 67/108 (62%), Positives = 82/108 (75%)
 Frame = +3

Query: 3   VLKSCAGLSSLHLGRRLHVVVFVNGFSYDVATCNALISMYCKCGDLVMARKVFDGMAMRN 182
           VLKSCAGLS+L LG+++H  V VNGF+ D+   NALI+MY KCG+L  ARKVFDGM  RN
Sbjct: 115 VLKSCAGLSALRLGKQVHGAVLVNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERN 174

Query: 183 LITWSAMIAGYGMHGFSSEVFKLFEEMLDAGESPDGVTFTAILAACSH 326
            +TWS MIAGYGMHG   EVF++F  M++ GE  D V+FT +L ACSH
Sbjct: 175 EVTWSTMIAGYGMHGRFEEVFEMFNRMVEVGERMDNVSFTVVLTACSH 222


>ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359886|gb|ABD32760.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485919|gb|AES67122.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score =  143 bits (361), Expect = 1e-32
 Identities = 66/108 (61%), Positives = 82/108 (75%)
 Frame = +3

Query: 3   VLKSCAGLSSLHLGRRLHVVVFVNGFSYDVATCNALISMYCKCGDLVMARKVFDGMAMRN 182
           VLKSCAGLS+L LG+++H  V VNGF+ D+   NALI+MY KCG+L  ARKVFDGM  RN
Sbjct: 115 VLKSCAGLSALRLGKQVHGAVLVNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERN 174

Query: 183 LITWSAMIAGYGMHGFSSEVFKLFEEMLDAGESPDGVTFTAILAACSH 326
            +TWS M+AGYGMHG   EVF++F  M++ GE  D V+FT +L ACSH
Sbjct: 175 EVTWSTMMAGYGMHGRFEEVFEMFNRMVEVGERMDNVSFTVVLTACSH 222