BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031036
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera]    87   1e-15
ref|XP_001780298.1| predicted protein [Physcomitrella patens sub...    67   1e-09
gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygr...    66   3e-09
ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containi...    62   4e-08
dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]                       62   5e-08

>emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera]
          Length = 799

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 47/81 (58%), Positives = 60/81 (74%), Gaps = 4/81 (4%)
 Frame = -3

Query: 238 ELSLLSISGRLDEAVRLLRRVDF----KLNAESYLPLIRACIKHKAFGKGREIHKHLVES 71
           +L LLS    LDEA+R+LR        +L++E+YL LIR+CIK KAF +GREIHKH+V +
Sbjct: 24  KLFLLSSRCHLDEAIRILRSNPSPNFPQLSSETYLSLIRSCIKFKAFSQGREIHKHMVNA 83

Query: 70  GVEGNVVLWNNIMIMYSKCGD 8
           G E ++VL NNIMIMYSK GD
Sbjct: 84  GFEPSLVLLNNIMIMYSKFGD 104


>ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162668246|gb|EDQ54857.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 986

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/79 (37%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
 Frame = -3

Query: 235 LSLLSISGRLDEAVRLLRRVD---FKLNAESYLPLIRACIKHKAFGKGREIHKHLVESGV 65
           L+ LS +G+ +EA+++L RVD    ++  ++Y  L++ CIK K  G G  I+ H+ +SGV
Sbjct: 82  LNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGV 141

Query: 64  EGNVVLWNNIMIMYSKCGD 8
           + ++ +WN ++ MY+KCG+
Sbjct: 142 QPDIFMWNTLINMYAKCGN 160


>gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
 Frame = -3

Query: 235 LSLLSISGRLDEAVRLLRRVD---FKLNAESYLPLIRACIKHKAFGKGREIHKHLVESGV 65
           L+ LS +G+L EA+ +L  VD    +++ ++Y  L++ CIKHK  G G  IH H+  S +
Sbjct: 76  LNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKI 135

Query: 64  EGNVVLWNNIMIMYSKCGD 8
           + ++ +WN ++ MY+KCG+
Sbjct: 136 QPDIFMWNMLISMYAKCGN 154


>ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 30/84 (35%), Positives = 46/84 (54%)
 Frame = -3

Query: 256 ENYIKRELSLLSISGRLDEAVRLLRRVDFKLNAESYLPLIRACIKHKAFGKGREIHKHLV 77
           +N  +  + +L    R+ EAV LL R D + +A  Y  LI AC++H+A   GR +H H  
Sbjct: 55  DNKFEEAVDVLCQQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTK 114

Query: 76  ESGVEGNVVLWNNIMIMYSKCGDV 5
            S     V + N ++ MY+KCG +
Sbjct: 115 ASNFVPGVFISNRLLDMYAKCGSL 138


>dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 29/79 (36%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
 Frame = -3

Query: 235 LSLLSISGRLDEAVRLLRRVD---FKLNAESYLPLIRACIKHKAFGKGREIHKHLVESGV 65
           L+ LS +G+ +EA+++L RVD    ++  ++Y  L++ CIK K  G G  I+ H+ +SGV
Sbjct: 82  LNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGV 141

Query: 64  EGNVVLWNNIMIMYSKCGD 8
           + ++ + N ++ MY+KCG+
Sbjct: 142 QPDIFMRNTLINMYAKCGN 160