BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030996
         (582 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   253   2e-65
emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]   253   2e-65
ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|2...   244   6e-63
ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat...   229   3e-58
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...   226   2e-57

>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial [Vitis vinifera]
            gi|296085293|emb|CBI29025.3| unnamed protein product
            [Vitis vinifera]
          Length = 854

 Score =  253 bits (646), Expect = 2e-65
 Identities = 121/191 (63%), Positives = 151/191 (79%)
 Frame = +3

Query: 3    NSDRLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIK 182
            NS+RLEE + +L EMK SG RPT+FTHN IFGCLCRRE V   LD+++EMRV GHEPWIK
Sbjct: 504  NSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIK 563

Query: 183  HSSGLVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDI 362
            H + LVKQLC R  + +AC+FLA+M REGFLPDI+AYSAAIDG  KI+ VD+A+++F DI
Sbjct: 564  HYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDI 623

Query: 363  SSRGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANEL 542
             +RG+ PDVVAYN +I+G CK  RV EA  + +EM+ KGL+PSVVTYN +IDG CK  ++
Sbjct: 624  CARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDI 683

Query: 543  DQAFCCFKQMV 575
            DQAF C  +MV
Sbjct: 684  DQAFHCLSRMV 694



 Score = 89.0 bits (219), Expect = 5e-16
 Identities = 55/204 (26%), Positives = 103/204 (50%), Gaps = 17/204 (8%)
 Frame = +3

Query: 12  RLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSS 191
           R++++ ++  +M++SG  P    ++ + G LC ++ +   L L+ EM+  G +P I+  S
Sbjct: 318 RVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILS 377

Query: 192 GLVKQLCSRGDAIKAC-DFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISS 368
            L+       D  +   + L D+  E  L   + Y++ ++GL   + VDKA  L   ++ 
Sbjct: 378 KLIAYCSEEVDIYRLIEERLEDLDTEAML---LLYNSVLNGLVNGKSVDKAYYLLRAMTG 434

Query: 369 RGH----------------GPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVT 500
             +                 PD  +++IVIDGLC  G++  A  LF +M+  G   +V+ 
Sbjct: 435 DNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLL 494

Query: 501 YNSMIDGLCKANELDQAFCCFKQM 572
           YN++ID L  +N L++ +   K+M
Sbjct: 495 YNNLIDKLSNSNRLEECYLLLKEM 518



 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 50/187 (26%), Positives = 89/187 (47%)
 Frame = +3

Query: 15   LEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSG 194
            ++++ EI  ++   G+ P    +N +    C+ + V    D++ EM   G  P +   + 
Sbjct: 613  VDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNL 672

Query: 195  LVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRG 374
            L+   C  GD  +A   L+ M  +   P++I Y+  IDGL      D A+ L++++  +G
Sbjct: 673  LIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKG 732

Query: 375  HGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAF 554
              P+ +++  +I GLCK G    A + F EM E+   P  + Y ++I           AF
Sbjct: 733  CSPNRISFIALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYVALITSFISNKNPTLAF 791

Query: 555  CCFKQMV 575
               K+MV
Sbjct: 792  EILKEMV 798



 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 43/170 (25%), Positives = 79/170 (46%)
 Frame = +3

Query: 63  RPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSGLVKQLCSRGDAIKACD 242
           RP   + + +   LC    +   L L ++M   G +  +   + L+ +L +     +   
Sbjct: 454 RPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYL 513

Query: 243 FLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDVVAYNIVIDGLC 422
            L +M   GF P    +++    L +  +V  A+ +  ++   GH P +  Y +++  LC
Sbjct: 514 LLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLC 573

Query: 423 KQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFCCFKQM 572
           K+ R  EA     EM+ +G LP +V Y++ IDG  K   +DQA   F+ +
Sbjct: 574 KRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDI 623



 Score = 65.1 bits (157), Expect = 8e-09
 Identities = 44/169 (26%), Positives = 79/169 (46%)
 Frame = +3

Query: 66  PTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSGLVKQLCSRGDAIKACDF 245
           P  ++ NC+   + +  S+  +   +KEM   G EP     + +++  C+     KA   
Sbjct: 197 PNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSV 256

Query: 246 LADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDVVAYNIVIDGLCK 425
             ++   G++ D    S  +    K  EVDKA +L   +   G   +   + ++I G  +
Sbjct: 257 FNEIYGRGWV-DGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVR 315

Query: 426 QGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFCCFKQM 572
           Q RV +A  LF +M + G  P V  Y+++I GLC   E+++A     +M
Sbjct: 316 QSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEM 364



 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 35/217 (16%)
 Frame = +3

Query: 36  LGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHS--SGLVKQL 209
           L EM +SG  P ++T   +    C        L +  E+   G   W+     S LV   
Sbjct: 222 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRG---WVDGHVLSILVLTF 278

Query: 210 CSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDV 389
              G+  KA + +  M   G   +   +   I G  +   VDKA++LF  +   G  PDV
Sbjct: 279 SKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDV 338

Query: 390 VAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSV------------------------- 494
             Y+ +I GLC +  + +A  L +EM E G+ P +                         
Sbjct: 339 SVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLE 398

Query: 495 --------VTYNSMIDGLCKANELDQAFCCFKQMVDE 581
                   + YNS+++GL     +D+A+   + M  +
Sbjct: 399 DLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGD 435


>emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  253 bits (646), Expect = 2e-65
 Identities = 121/191 (63%), Positives = 151/191 (79%)
 Frame = +3

Query: 3    NSDRLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIK 182
            NS+RLEE + +L EMK SG RPT+FTHN IFGCLCRRE V   LD+++EMRV GHEPWIK
Sbjct: 464  NSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIK 523

Query: 183  HSSGLVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDI 362
            H + LVKQLC R  + +AC+FLA+M REGFLPDI+AYSAAIDG  KI+ VD+A+++F DI
Sbjct: 524  HYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDI 583

Query: 363  SSRGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANEL 542
             +RG+ PDVVAYN +I+G CK  RV EA  + +EM+ KGL+PSVVTYN +IDG CK  ++
Sbjct: 584  CARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDI 643

Query: 543  DQAFCCFKQMV 575
            DQAF C  +MV
Sbjct: 644  DQAFHCLSRMV 654



 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 17/204 (8%)
 Frame = +3

Query: 12  RLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSS 191
           R++++ ++  +M++SG  P    ++ + G LC ++ +   L L+ EM+  G +P I+  S
Sbjct: 278 RVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILS 337

Query: 192 GLVKQLCSRGDAIKAC-DFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISS 368
            L+       D  +   + L D+  E  L   + Y++ ++GL   + VDKA  L   ++ 
Sbjct: 338 KLIPYCSEEVDIYRLIEERLEDLDTEAML---LLYNSVLNGLVNGKSVDKAYYLLXAMTG 394

Query: 369 RGH----------------GPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVT 500
             +                 P   +++IVIDGLC  G++  A  LF +M+  G   +V+ 
Sbjct: 395 DNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLL 454

Query: 501 YNSMIDGLCKANELDQAFCCFKQM 572
           YN++ID L  +N L++ +   K+M
Sbjct: 455 YNNLIDKLSNSNRLEECYLLLKEM 478



 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 50/187 (26%), Positives = 89/187 (47%)
 Frame = +3

Query: 15   LEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSG 194
            ++++ EI  ++   G+ P    +N +    C+ + V    D++ EM   G  P +   + 
Sbjct: 573  VDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNL 632

Query: 195  LVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRG 374
            L+   C  GD  +A   L+ M  +   P++I Y+  IDGL      D A+ L++++  +G
Sbjct: 633  LIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKG 692

Query: 375  HGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAF 554
              P+ +++  +I GLCK G    A + F EM E+   P  + Y ++I           AF
Sbjct: 693  CSPNRISFIALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYVALITSFISNKNPTLAF 751

Query: 555  CCFKQMV 575
               K+MV
Sbjct: 752  EILKEMV 758



 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 43/170 (25%), Positives = 79/170 (46%)
 Frame = +3

Query: 63  RPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSGLVKQLCSRGDAIKACD 242
           RP   + + +   LC    +   L L ++M   G +  +   + L+ +L +     +   
Sbjct: 414 RPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYL 473

Query: 243 FLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDVVAYNIVIDGLC 422
            L +M   GF P    +++    L +  +V  A+ +  ++   GH P +  Y +++  LC
Sbjct: 474 LLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLC 533

Query: 423 KQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFCCFKQM 572
           K+ R  EA     EM+ +G LP +V Y++ IDG  K   +DQA   F+ +
Sbjct: 534 KRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDI 583



 Score = 62.4 bits (150), Expect = 5e-08
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 2/162 (1%)
 Frame = +3

Query: 36  LGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHS--SGLVKQL 209
           L EM +SG  P ++T   +    C        L +  E+   G   W+     S LV   
Sbjct: 182 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRG---WVDGHVLSILVLTF 238

Query: 210 CSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDV 389
              G+  KA + +  M   G   +   +   I G  +   VDKA++LF  +   G  PDV
Sbjct: 239 SKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDV 298

Query: 390 VAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMI 515
             Y+ +I GLC +  + +A  L +EM E G+ P +   + +I
Sbjct: 299 SVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 340


>ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|222856609|gb|EEE94156.1|
           predicted protein [Populus trichocarpa]
          Length = 726

 Score =  244 bits (624), Expect = 6e-63
 Identities = 113/192 (58%), Positives = 148/192 (77%)
 Frame = +3

Query: 6   SDRLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKH 185
           S+RL+ES  +L EM+ESG  PT FT+NCIFGCLCRR  +   L L+K+MR+ GH PWIKH
Sbjct: 372 SNRLQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKH 431

Query: 186 SSGLVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDIS 365
           S+ LVK+LC  G  ++AC FL DMA EGF PDI+AYSA +DGL KI+EVD+A+KLF DI 
Sbjct: 432 STSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDIC 491

Query: 366 SRGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELD 545
           ++G+ PDV+AYNI+I GLCK  R+ EA+ L +EM EKGL+PS VTYN++IDGLCK + L+
Sbjct: 492 AQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLE 551

Query: 546 QAFCCFKQMVDE 581
           +A      M+++
Sbjct: 552 EAMLFLSMMIEK 563



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 49/189 (25%), Positives = 89/189 (47%)
 Frame = +3

Query: 15   LEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSG 194
            ++++ ++  ++   G+ P    +N +   LC+ + +    +L+ EM   G  P     + 
Sbjct: 480  VDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNT 539

Query: 195  LVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRG 374
            L+  LC      +A  FL+ M  +   P++I YS  I+GL      D A+ L++++  +G
Sbjct: 540  LIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKG 599

Query: 375  HGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAF 554
              P  +AY   I GL   GR  EA V   EM E+ + P    Y  +++     +    AF
Sbjct: 600  CTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAF 659

Query: 555  CCFKQMVDE 581
               ++MVD+
Sbjct: 660  EILQEMVDK 668



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 42/169 (24%), Positives = 77/169 (45%)
 Frame = +3

Query: 66  PTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSGLVKQLCSRGDAIKACDF 245
           P   T + +   L +   +   + L ++M   G +P +   + L+  LC+     ++C  
Sbjct: 322 PNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGL 381

Query: 246 LADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDVVAYNIVIDGLCK 425
           L +M   G  P     +     L +  ++  A+ L   +   GH P +     ++  LCK
Sbjct: 382 LQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCK 441

Query: 426 QGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFCCFKQM 572
            G+ +EA     +M E+G  P +V Y++ +DGL K  E+DQA   F+ +
Sbjct: 442 HGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDI 490



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 2/184 (1%)
 Frame = +3

Query: 36  LGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHS--SGLVKQL 209
           L EM + G    ++T   +    C        LD+  E+   G   W+     S LV   
Sbjct: 89  LKEMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRG---WVDEYVFSILVLAF 145

Query: 210 CSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDV 389
              G   KAC+ +  M  +    +   + + I G  K   VDKA+ LF  +   G  PD+
Sbjct: 146 SKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDI 205

Query: 390 VAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFCCFKQ 569
             Y+++I GLC    V +A  L++EM    + P V     +I    K  EL    C F++
Sbjct: 206 SLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELT---CFFEE 262

Query: 570 MVDE 581
           M ++
Sbjct: 263 MHED 266



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 43/163 (26%), Positives = 73/163 (44%)
 Frame = +3

Query: 6    SDRLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKH 185
            + R+ E+  +L EM+E G  P+  T+N +   LC+ + +   +  +  M     EP +  
Sbjct: 512  TQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVIT 571

Query: 186  SSGLVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDIS 365
             S L+  LC+ G    A     +M R+G  P  IAY A I GL      ++A+    ++ 
Sbjct: 572  YSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREME 631

Query: 366  SRGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSV 494
             R   PD   Y  +++          A  +  EM++KG  P +
Sbjct: 632  EREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDL 674


>ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  229 bits (583), Expect = 3e-58
 Identities = 110/193 (56%), Positives = 146/193 (75%)
 Frame = +3

Query: 3    NSDRLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIK 182
            +S+RLEES E+L EMKESG  PT FT+N I+GCLC+R+ VL  +D++K MR CGHEPWIK
Sbjct: 479  DSNRLEESRELLREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIK 538

Query: 183  HSSGLVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDI 362
            +S+ LVK+LC  G AI+AC+FL  M ++GFLPDI++YSAAI GL +I+E+++A++LF D+
Sbjct: 539  NSTLLVKELCDHGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDL 598

Query: 363  SSRGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANEL 542
             SRGH PDVVA NI++ GLCK  RV EA  L +E++ KG  PSVVTYN +ID  CK   +
Sbjct: 599  YSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSV 658

Query: 543  DQAFCCFKQMVDE 581
            D+A     +M  E
Sbjct: 659  DKAMALLSRMSGE 671



 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 51/170 (30%), Positives = 88/170 (51%)
 Frame = +3

Query: 21   ESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSGLV 200
            E+   L  M + G  P   +++   G L + + +   L L  ++   GH P +  S+ L+
Sbjct: 555  EACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDLYSRGHCPDVVASNILM 614

Query: 201  KQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHG 380
            + LC      +A   L ++  +GF P ++ Y+  ID   K   VDKAM L   +S     
Sbjct: 615  RGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNLLIDSWCKNGSVDKAMALLSRMSGEDRE 674

Query: 381  PDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCK 530
            P+V+ Y+ ++DG C+  R  +A +++NEM  KG  P+ + + ++I GLCK
Sbjct: 675  PNVITYSTLVDGFCRAERPDDALLVWNEMERKGCFPNQIAFMALIYGLCK 724



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 52/187 (27%), Positives = 87/187 (46%)
 Frame = +3

Query: 15   LEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSG 194
            L  + ++  ++   GH P     N +   LC+   V     L+ E+ V G  P +   + 
Sbjct: 588  LNRALQLFSDLYSRGHCPDVVASNILMRGLCKAYRVREAEKLLDEIVVKGFFPSVVTYNL 647

Query: 195  LVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRG 374
            L+   C  G   KA   L+ M+ E   P++I YS  +DG  +    D A+ +++++  +G
Sbjct: 648  LIDSWCKNGSVDKAMALLSRMSGEDREPNVITYSTLVDGFCRAERPDDALLVWNEMERKG 707

Query: 375  HGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAF 554
              P+ +A+  +I GLCK  R   A     EM +K + P    Y ++I       +L  AF
Sbjct: 708  CFPNQIAFMALIYGLCKCCRPTTALHYLREMEQKDMKPDSFIYIALISSFLSDMDLASAF 767

Query: 555  CCFKQMV 575
              FK+MV
Sbjct: 768  EIFKEMV 774



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 62/237 (26%), Positives = 95/237 (40%), Gaps = 50/237 (21%)
 Frame = +3

Query: 12   RLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSS 191
            R++ + ++   M   G  P     + + G LCR       L L+ EM+  G  P +   +
Sbjct: 292  RVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIFT 351

Query: 192  GLVKQLCSRGDAIK---------------------------------ACDFL-------- 248
             L+     RG   K                                 AC FL        
Sbjct: 352  KLISAFPDRGVIAKLLEEVPGGEEERTLVLIYNAVLTCYVNDGLMDEACRFLRMMIQSKA 411

Query: 249  -ADMAREGF--------LPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDVVAYN 401
              D+  +GF         P+  ++S  I+GL K  ++D A+ LF+D+      P V+ YN
Sbjct: 412  SGDVQMDGFFNKVKKLVFPNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYN 471

Query: 402  IVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFCCFKQM 572
             +I+ LC   R+ E+R L  EM E G+ P+  TYNS+   LCK  ++  A    K M
Sbjct: 472  NLINSLCDSNRLEESRELLREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGM 528



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 40/169 (23%), Positives = 79/169 (46%)
 Frame = +3

Query: 66  PTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSGLVKQLCSRGDAIKACDF 245
           P   + + +   L + + +   L L  +M+     P +   + L+  LC      ++ + 
Sbjct: 430 PNGASFSIVINGLLKNDQLDLALSLFNDMKQFVDRPSVLIYNNLINSLCDSNRLEESREL 489

Query: 246 LADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDVVAYNIVIDGLCK 425
           L +M   G  P    Y++    L K ++V  A+ +   + + GH P +    +++  LC 
Sbjct: 490 LREMKESGVEPTHFTYNSIYGCLCKRKDVLGAIDMLKGMRACGHEPWIKNSTLLVKELCD 549

Query: 426 QGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFCCFKQM 572
            G  IEA    + M+++G LP +V+Y++ I GL +  EL++A   F  +
Sbjct: 550 HGMAIEACNFLDSMVQQGFLPDIVSYSAAIGGLIQIQELNRALQLFSDL 598



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
 Frame = +3

Query: 36  LGEMKESGHRPTEFTHNCIFGCLC---RRESVLALLDLMKEMR-VCGHEPWIKHSSGLVK 203
           L EMK  G    +FT   +    C   R +  L + ++M+E   V GH       S L  
Sbjct: 196 LEEMKGFGWEFDKFTLTPLLQAYCNARRFDEALRVYNVMREKGWVDGHV-----CSMLAL 250

Query: 204 QLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGP 383
                GD  KA + +  M   G   +   +   I G  K   VD+A++LF  +   G  P
Sbjct: 251 SFSKWGDVDKAFELVERMEGHGMRLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTP 310

Query: 384 DVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMI 515
            V  ++++I GLC+ G    A  L +EM E G+ P V  +  +I
Sbjct: 311 PVSLFDVLIGGLCRNGDSHRALSLLSEMKEFGVTPDVGIFTKLI 354



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 1/185 (0%)
 Frame = +3

Query: 21  ESFEILGEMKESGHR-PTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSGL 197
           E+  +  EM+  G   P ++ +NC+   L +   V  +   ++EM+  G E      + L
Sbjct: 155 EAHHLFDEMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMKGFGWEFDKFTLTPL 214

Query: 198 VKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGH 377
           ++  C+     +A      M  +G++   +    A+    K  +VDKA +L   +   G 
Sbjct: 215 LQAYCNARRFDEALRVYNVMREKGWVDGHVCSMLALS-FSKWGDVDKAFELVERMEGHGM 273

Query: 378 GPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFC 557
             +   + ++I G  K+GRV  A  LF+ M   G  P V  ++ +I GLC+  +  +A  
Sbjct: 274 RLNEKTFCVLIHGFVKEGRVDRALQLFDIMCRVGFTPPVSLFDVLIGGLCRNGDSHRALS 333

Query: 558 CFKQM 572
              +M
Sbjct: 334 LLSEM 338


>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score =  226 bits (576), Expect = 2e-57
 Identities = 111/190 (58%), Positives = 144/190 (75%)
 Frame = +3

Query: 3   NSDRLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIK 182
           NSDRLEES+++L EM+ESG +PT+FT N IFGCLC+R+ V   LDL+K+MR+ G EPW+K
Sbjct: 278 NSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVK 337

Query: 183 HSSGLVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDI 362
           H + LV++LC  G A +A  FL DM +EGF P+IIAYSA + GL +++EVD+A+KLF DI
Sbjct: 338 HYTLLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDI 397

Query: 363 SSRGHGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANEL 542
           S+RG  PDV+AYNI++ GL +  R  EAR LFNEM+ KGL+PSVVTYN +IDG CK   +
Sbjct: 398 SARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCI 457

Query: 543 DQAFCCFKQM 572
           D A  C   M
Sbjct: 458 DDAMNCLCSM 467



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 49/188 (26%), Positives = 86/188 (45%)
 Frame = +3

Query: 15  LEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSG 194
           ++++ ++  ++   G  P    +N +   L          +L  EM + G  P +   + 
Sbjct: 387 VDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNL 446

Query: 195 LVKQLCSRGDAIKACDFLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRG 374
           L+   C  G    A + L  M+ +   P++  Y+  IDGL K    D A+ L++++  RG
Sbjct: 447 LIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRG 506

Query: 375 HGPDVVAYNIVIDGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAF 554
             P+ VA+   I GLCK  +   A + F+EM E+ + P    Y S++      +    AF
Sbjct: 507 CRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEEEEMEPDTYVYISLVSAFVNISNFPMAF 566

Query: 555 CCFKQMVD 578
              K+MVD
Sbjct: 567 EILKKMVD 574



 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 47/234 (20%)
 Frame = +3

Query: 12  RLEESFEILGEMKESGHRPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSS 191
           R+++  ++  +M++ G  P    ++ + G  C  + +   L L  EM++   +P I   S
Sbjct: 94  RVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVS 153

Query: 192 GLVKQLCSRGDAI---------------------------------KACDFLADMAREG- 269
            L+      G  I                                 KAC  L +M   G 
Sbjct: 154 KLISSFPEEGKLIDILEETLEDMNIETQTLLCNSVLSSLVNSGLIDKACCLLRNMMGNGD 213

Query: 270 -------------FLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDVVAYNIVI 410
                          P+  ++S  I+GL +  ++D A+ LF D++  G   D++ YN +I
Sbjct: 214 DDDVQYKLFRDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLI 273

Query: 411 DGLCKQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFCCFKQM 572
           +GLC   R+ E+  L  EM E G  P+  T NS+   LCK  ++  A    K+M
Sbjct: 274 NGLCNSDRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKM 327



 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 41/170 (24%), Positives = 81/170 (47%)
 Frame = +3

Query: 63  RPTEFTHNCIFGCLCRRESVLALLDLMKEMRVCGHEPWIKHSSGLVKQLCSRGDAIKACD 242
           RP   + + +   L +   +   + L ++M   G    +   + L+  LC+     ++  
Sbjct: 228 RPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYK 287

Query: 243 FLADMAREGFLPDIIAYSAAIDGLFKIREVDKAMKLFHDISSRGHGPDVVAYNIVIDGLC 422
            L +M   GF P     ++    L K ++V  A+ L   +   G  P V  Y +++  LC
Sbjct: 288 LLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLVRKLC 347

Query: 423 KQGRVIEARVLFNEMLEKGLLPSVVTYNSMIDGLCKANELDQAFCCFKQM 572
           K G+  EA +   +M+++G  P+++ Y++++ GL +  E+DQA   FK +
Sbjct: 348 KHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDI 397