BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030968
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_187518.1| pentatricopeptide repeat-containing protein [Ar...    59   4e-07
ref|XP_002330195.1| predicted protein [Populus trichocarpa] gi|2...    58   7e-07
ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selag...    57   2e-06
ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06
emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]    56   3e-06

>ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g09060 gi|5923671|gb|AAD56322.1|AC009326_9
           hypothetical protein [Arabidopsis thaliana]
           gi|332641194|gb|AEE74715.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/89 (33%), Positives = 53/89 (59%)
 Frame = -1

Query: 278 PSCSSCNVLLQGLFRSKQINLGLELFHQMQDGWIDALDSQSFNIVMKVACVGGRMEEAMV 99
           P   + ++LL GL R ++I+L LEL+HQ     ++  D    NI++   C  G++++AM 
Sbjct: 532 PDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLET-DVMMHNILIHGLCSVGKLDDAMT 590

Query: 98  HFNTMKGRDCMPDLDSFNNLIKGFSEKGD 12
               M+ R+C  +L ++N L++GF + GD
Sbjct: 591 VMANMEHRNCTANLVTYNTLMEGFFKVGD 619


>ref|XP_002330195.1| predicted protein [Populus trichocarpa] gi|222871651|gb|EEF08782.1|
           predicted protein [Populus trichocarpa]
          Length = 529

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/89 (31%), Positives = 50/89 (56%)
 Frame = -1

Query: 278 PSCSSCNVLLQGLFRSKQINLGLELFHQMQDGWIDALDSQSFNIVMKVACVGGRMEEAMV 99
           P+  + NVL+ G  ++K +N  + LF+ M+   +D  ++ ++  ++   C  GRME+A  
Sbjct: 296 PNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDP-NAMTYTTLIDAYCKDGRMEDAFA 354

Query: 98  HFNTMKGRDCMPDLDSFNNLIKGFSEKGD 12
            +N M  R   P++ ++N LI G   KGD
Sbjct: 355 LYNMMIDRGIFPEVSTYNCLIAGLCRKGD 383


>ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
           gi|300170845|gb|EFJ37446.1| hypothetical protein
           SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/93 (32%), Positives = 52/93 (55%)
 Frame = -1

Query: 281 VPSCSSCNVLLQGLFRSKQINLGLELFHQMQDGWIDALDSQSFNIVMKVACVGGRMEEAM 102
           +P   +CN++L GL ++++I+  +ELF +M     +     S+N V+       +M+EA 
Sbjct: 17  MPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPT-IVSYNTVISGLASIDKMDEAY 75

Query: 101 VHFNTMKGRDCMPDLDSFNNLIKGFSEKGDPEM 3
             FN+M    C PD+ +F  LI GF + G P++
Sbjct: 76  KFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 108


>ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/92 (32%), Positives = 51/92 (55%)
 Frame = -1

Query: 278 PSCSSCNVLLQGLFRSKQINLGLELFHQMQDGWIDALDSQSFNIVMKVACVGGRMEEAMV 99
           P+ +S N L+ G      +N G++L   M+   +   D  +FN ++   C GG++ EA  
Sbjct: 347 PTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRP-DDVTFNTLINGFCRGGKLHEANK 405

Query: 98  HFNTMKGRDCMPDLDSFNNLIKGFSEKGDPEM 3
            F+ MK  D +P+  ++N LI G+S+ G+ EM
Sbjct: 406 IFSEMKANDVVPNTITYNTLINGYSQVGNSEM 437


>emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/92 (32%), Positives = 51/92 (55%)
 Frame = -1

Query: 278 PSCSSCNVLLQGLFRSKQINLGLELFHQMQDGWIDALDSQSFNIVMKVACVGGRMEEAMV 99
           P+ +S N L+ G      +N G++L   M+   +   D  +FN ++   C GG++ EA  
Sbjct: 214 PTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRP-DDVTFNTLINGFCRGGKLHEANK 272

Query: 98  HFNTMKGRDCMPDLDSFNNLIKGFSEKGDPEM 3
            F+ MK  D +P+  ++N LI G+S+ G+ EM
Sbjct: 273 IFSEMKANDVVPNTITYNTLINGYSQVGNSEM 304