BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030952
         (418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_181553.1| pentatricopeptide repeat-containing protein [Ar...   114   6e-24
ref|XP_002512332.1| pentatricopeptide repeat-containing protein,...   114   8e-24
ref|XP_002879856.1| pentatricopeptide repeat-containing protein ...   109   2e-22
ref|XP_002876347.1| hypothetical protein ARALYDRAFT_486042 [Arab...   108   4e-22
ref|NP_191162.2| pentatricopeptide repeat-containing protein [Ar...   108   4e-22

>ref|NP_181553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75265350|sp|Q9S733.1|PP196_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g40240, mitochondrial; Flags: Precursor
           gi|4587998|gb|AAD25939.1|AF085279_12 hypothetical
           protein [Arabidopsis thaliana] gi|4586041|gb|AAD25659.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|28393486|gb|AAO42164.1| unknown protein [Arabidopsis
           thaliana] gi|28973567|gb|AAO64108.1| unknown protein
           [Arabidopsis thaliana] gi|110737021|dbj|BAF00465.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|330254707|gb|AEC09801.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 351

 Score =  114 bits (286), Expect = 6e-24
 Identities = 57/100 (57%), Positives = 73/100 (73%)
 Frame = +3

Query: 6   GKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLAFEFVMAFAGRDKALDKENF 185
           GKVE A+ +LR+MEE+GV VLY TH HVIT L+  G + L  EFVMA+AG+D  LD E+F
Sbjct: 226 GKVEAAMAILRRMEEDGVTVLYSTHAHVITGLVEGGYYALGLEFVMAYAGKDLRLDSESF 285

Query: 186 GFLLNCLIKRRRVEEAKLVFFEMEERGLAMGEKLMKEYQG 305
           GFL   L+KR+R EEA +V  EM  RGL MG++L + Y+G
Sbjct: 286 GFLAGKLVKRKRYEEAMIVVKEMVMRGLRMGDELRQFYEG 325


>ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548293|gb|EEF49784.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  114 bits (285), Expect = 8e-24
 Identities = 59/94 (62%), Positives = 70/94 (74%)
 Frame = +3

Query: 6   GKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLAFEFVMAFAGRDKALDKENF 185
           GKVE AL++LR+M ++GV VLY THVHVI +LL +GC+  A +FVM F GRD A D E F
Sbjct: 514 GKVEAALVVLRRMVDDGVHVLYSTHVHVINALLRLGCYVQATKFVMIFGGRDIAFDTEIF 573

Query: 186 GFLLNCLIKRRRVEEAKLVFFEMEERGLAMGEKL 287
           G L + LIK  R EEAKLV  EMEERGL MG+KL
Sbjct: 574 GILASKLIKLERFEEAKLVLKEMEERGLVMGDKL 607


>ref|XP_002879856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325695|gb|EFH56115.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 338

 Score =  109 bits (273), Expect = 2e-22
 Identities = 55/100 (55%), Positives = 72/100 (72%)
 Frame = +3

Query: 6   GKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLAFEFVMAFAGRDKALDKENF 185
           GKVE A+ +LR+MEE+ V VLY TH HVI  L+  G + L  EFVMA+AG+D  LD E+F
Sbjct: 226 GKVEAAMAILRRMEEDCVTVLYSTHAHVIAGLVEGGYYALGLEFVMAYAGKDLGLDGESF 285

Query: 186 GFLLNCLIKRRRVEEAKLVFFEMEERGLAMGEKLMKEYQG 305
           GFL   L+KR+R EEAK+V  EM  RGL MG++L + ++G
Sbjct: 286 GFLAGKLVKRKRFEEAKIVVKEMVMRGLRMGDELRQFFEG 325


>ref|XP_002876347.1| hypothetical protein ARALYDRAFT_486042 [Arabidopsis lyrata subsp.
           lyrata] gi|297322185|gb|EFH52606.1| hypothetical protein
           ARALYDRAFT_486042 [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score =  108 bits (270), Expect = 4e-22
 Identities = 55/94 (58%), Positives = 70/94 (74%)
 Frame = +3

Query: 6   GKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLAFEFVMAFAGRDKALDKENF 185
           G VE A+++LR+MEEEG+ VLY TH +VI  LL  G + L+ EFVMA+AG+DK LD+EN 
Sbjct: 230 GNVEAAMVILRRMEEEGLSVLYATHAYVIGELLESGYYALSVEFVMAYAGKDKRLDEENL 289

Query: 186 GFLLNCLIKRRRVEEAKLVFFEMEERGLAMGEKL 287
           G L + LIKR+R +EAKLV  EM  RGL MG+ L
Sbjct: 290 GSLASKLIKRKRFKEAKLVLKEMSVRGLRMGDAL 323


>ref|NP_191162.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546756|sp|Q9LY43.2|PP283_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g56030 gi|332645947|gb|AEE79468.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 351

 Score =  108 bits (270), Expect = 4e-22
 Identities = 53/99 (53%), Positives = 73/99 (73%)
 Frame = +3

Query: 6   GKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLAFEFVMAFAGRDKALDKENF 185
           G+VE A+ +LR+MEEEG+ VLY TH HVI  ++  G + L+ EFVMA+AG+DK LD+EN 
Sbjct: 247 GRVEAAMAILRRMEEEGLSVLYATHAHVIGEMVESGYYALSVEFVMAYAGKDKRLDEENL 306

Query: 186 GFLLNCLIKRRRVEEAKLVFFEMEERGLAMGEKLMKEYQ 302
           G L + LIKR+R +EAK+V  EM  RGL MG+ L + ++
Sbjct: 307 GSLASKLIKRKRFKEAKMVLKEMSVRGLRMGDALREFHE 345