BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030799
         (700 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi...   322   5e-86
emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]   319   3e-85
ref|XP_002308772.1| predicted protein [Populus trichocarpa] gi|2...   315   4e-84
ref|XP_002883344.1| pentatricopeptide repeat-containing protein ...   311   6e-83
ref|XP_002520572.1| pentatricopeptide repeat-containing protein,...   308   5e-82

>ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
            chloroplastic [Vitis vinifera]
          Length = 825

 Score =  322 bits (825), Expect = 5e-86
 Identities = 152/231 (65%), Positives = 186/231 (80%)
 Frame = +3

Query: 6    PSGGISLGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDSIPEKNTVTYTT 185
            P G I LGKQIHG+AIR  ++ NVFVGTAL+DMYSK  +I+YAE V     EKN+VTYTT
Sbjct: 537  PMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTT 596

Query: 186  IILGYGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACSYSGLVDKGLKIFESMESSY 365
            +I  YGQHG+G+RALS+F  M   G+ PD++TFVAILSACSY+GLVD+GL+IF+SME  Y
Sbjct: 597  MISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREY 656

Query: 366  GILPTTEHYCCVVDMLGRAGRVVEAYEFVKALGDRANAAGIWGSLLGACRMHGEMELGRI 545
             I P+ EHYCCV DMLGR GRVVEAYEFVK LG+  N  GIWGSLLGACR+HGE ELG++
Sbjct: 657  KIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKV 716

Query: 546  ISDRLFEVEEDNDVTGYHVLLSNIYADKEMWDSADRVRKNMREKGLRKETG 698
            ++++L E+E+ + +TGYHVLLSNIYA +  WD+ DRVRK MR+KGL KE G
Sbjct: 717  VANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAG 767



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 11/194 (5%)
 Frame = +3

Query: 18  ISLGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDSIPEKNTVTYTTIILG 197
           + LG+Q+H Y ++ S    V +  A+I MYS+C SI  + KV  ++ E++ VT+ T++  
Sbjct: 338 LELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 198 YGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACS-----------YSGLVDKGLKIF 344
           + Q+GL D  L +   M + G   D++T  A+LS  S           ++ L+  G++ F
Sbjct: 398 FVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-F 456

Query: 345 ESMESSYGILPTTEHYCCVVDMLGRAGRVVEAYEFVKALGDRANAAGIWGSLLGACRMHG 524
           E M+S             ++DM  ++G +  A +  +   D       W +++     +G
Sbjct: 457 EGMDS------------YLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNG 504

Query: 525 EMELGRIISDRLFE 566
             E G  +  ++ E
Sbjct: 505 LSEEGFAVFRKMIE 518



 Score = 70.1 bits (170), Expect = 4e-10
 Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
 Frame = +3

Query: 24  LGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCD--SIPEKNTVTYTTIILG 197
           +GKQ H Y IRH I     + + LIDMY+K   I+ A+++ +  S  +++  T+  +I G
Sbjct: 441 IGKQAHAYLIRHGIQFEG-MDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAG 499

Query: 198 YGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACSYSGLVDKGLKI 341
           Y Q+GL +   ++F+ M E  + P+A+T  +IL AC+  G +  G +I
Sbjct: 500 YTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQI 547


>emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  319 bits (818), Expect = 3e-85
 Identities = 151/231 (65%), Positives = 186/231 (80%)
 Frame = +3

Query: 6    PSGGISLGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDSIPEKNTVTYTT 185
            P G I LGKQIHG+AIR  ++ NVFVGTAL+DMYSK  +I+YAE V     EKN+VTYTT
Sbjct: 537  PMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTT 596

Query: 186  IILGYGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACSYSGLVDKGLKIFESMESSY 365
            +IL YGQHG+G+RALS+F  M   G+ PD++TFVAILSACSY+GLVD+GL+IF+SME  Y
Sbjct: 597  MILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREY 656

Query: 366  GILPTTEHYCCVVDMLGRAGRVVEAYEFVKALGDRANAAGIWGSLLGACRMHGEMELGRI 545
             I P++EHYCCV DMLGR GRV EAYEFVK LG+  N   IWGSLLGACR+HGE ELG++
Sbjct: 657  KIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKV 716

Query: 546  ISDRLFEVEEDNDVTGYHVLLSNIYADKEMWDSADRVRKNMREKGLRKETG 698
            ++++L E+E+ + +TGYHVLLSNIYA +  WD+ DRVRK MR+KGL KE G
Sbjct: 717  VANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAG 767



 Score = 73.9 bits (180), Expect = 3e-11
 Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
 Frame = +3

Query: 18  ISLGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDSIPEKNTVTYTTIILG 197
           + LG+Q+H Y ++ S    V +  A+I MYS+C SI  + KV  ++ E++ VT+ T++  
Sbjct: 338 LDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 198 YGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACS-----------YSGLVDKGLKIF 344
           + Q+GL D  L +   M + G   D++T  A+LS  S           ++ L+  G++ F
Sbjct: 398 FVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-F 456

Query: 345 ESMESSYGILPTTEHYCCVVDMLGRAGRVVEAYEFVKALGDRANAAGIWGSLLGACRMHG 524
           E M+              ++DM  ++G +  A +  +           W +++     +G
Sbjct: 457 EGMDG------------YLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNG 504

Query: 525 EMELGRIISDRLFE 566
             E G  +  ++ E
Sbjct: 505 LSEEGFAVFRKMIE 518



 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
 Frame = +3

Query: 24  LGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCD--SIPEKNTVTYTTIILG 197
           +GKQ H Y IRH I      G  LIDMY+K   I+ A+++ +  S  +++  T+  +I G
Sbjct: 441 IGKQAHAYLIRHGIQFEGMDGY-LIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAG 499

Query: 198 YGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACSYSGLVDKGLKI 341
           Y Q+GL +   ++F+ M E  + P+A+T  +IL AC+  G +  G +I
Sbjct: 500 YTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQI 547


>ref|XP_002308772.1| predicted protein [Populus trichocarpa] gi|222854748|gb|EEE92295.1|
           predicted protein [Populus trichocarpa]
          Length = 320

 Score =  315 bits (808), Expect = 4e-84
 Identities = 145/231 (62%), Positives = 186/231 (80%)
 Frame = +3

Query: 6   PSGGISLGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDSIPEKNTVTYTT 185
           P G I LGKQ+HG +IR  +D N+FV T+L+DMYSK  SI+YAE V   +P+KN+VTYTT
Sbjct: 42  PVGNIDLGKQLHGVSIRLLLDKNIFVSTSLVDMYSKSGSINYAESVFTKLPDKNSVTYTT 101

Query: 186 IILGYGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACSYSGLVDKGLKIFESMESSY 365
           +IL YGQHG+G+RALS+F +M + G+ PDAITF+A+LSACS+SGLVD+GL+IFESME  +
Sbjct: 102 MILAYGQHGMGERALSLFHSMKKSGIEPDAITFIAVLSACSHSGLVDEGLQIFESMEKDF 161

Query: 366 GILPTTEHYCCVVDMLGRAGRVVEAYEFVKALGDRANAAGIWGSLLGACRMHGEMELGRI 545
            I P+T HYCCV DMLGR GRVVEAYEFVK LG+  N   IWGSLLGACR+H  +ELG +
Sbjct: 162 KIQPSTPHYCCVTDMLGRVGRVVEAYEFVKQLGEAGNVLEIWGSLLGACRLHEHVELGEV 221

Query: 546 ISDRLFEVEEDNDVTGYHVLLSNIYADKEMWDSADRVRKNMREKGLRKETG 698
           ++ +L E+E+  ++TGYHVLLSNIYA++  W + D+VR+ MREKGL+KE G
Sbjct: 222 VAKKLLEMEKTGNITGYHVLLSNIYAEEGNWVNVDKVRREMREKGLQKEVG 272


>ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329184|gb|EFH59603.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 824

 Score =  311 bits (798), Expect = 6e-83
 Identities = 141/229 (61%), Positives = 182/229 (79%)
 Frame = +3

Query: 12   GGISLGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDSIPEKNTVTYTTII 191
            G + LGKQ+HG++IR  +D NVFV +AL+DMYSK  +I YAE +     E+N+VTYTT+I
Sbjct: 539  GSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMI 598

Query: 192  LGYGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACSYSGLVDKGLKIFESMESSYGI 371
            LGYGQHG+G+RA+S+F +M E G+ PDAI FVA+LSACSYSGLVD+GLKIFE M   Y I
Sbjct: 599  LGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNI 658

Query: 372  LPTTEHYCCVVDMLGRAGRVVEAYEFVKALGDRANAAGIWGSLLGACRMHGEMELGRIIS 551
             P++EHYCC+ DMLGR GRV EAYEFVK LG+  N A +WGSLLG+CR+HGE+EL   +S
Sbjct: 659  QPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCRLHGELELAETVS 718

Query: 552  DRLFEVEEDNDVTGYHVLLSNIYADKEMWDSADRVRKNMREKGLRKETG 698
            +RL ++++  + +GY VLLSN+YA+++ W S DRVRK MREKGL+KE G
Sbjct: 719  ERLAKLDKGKNFSGYEVLLSNMYAEEQNWKSVDRVRKGMREKGLKKEVG 767



 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
 Frame = +3

Query: 24  LGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDS--IPEKNTVTYTTIILG 197
           +GKQ HG+ IR  I     + + LIDMY+K   I  ++K+ +     E++  T+ ++I G
Sbjct: 441 IGKQTHGFLIRQGIQFEG-MNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISG 499

Query: 198 YGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACSYSGLVDKGLKIFESMESSYGILP 377
           Y Q+G  +    +F+ M E  + P+A+T  +IL ACS  G VD G ++       Y +  
Sbjct: 500 YTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQY-LDQ 558

Query: 378 TTEHYCCVVDMLGRAGRV 431
                  +VDM  +AG +
Sbjct: 559 NVFVASALVDMYSKAGAI 576



 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
 Frame = +3

Query: 18  ISLGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDSIPEKNTVTYTTIILG 197
           + LG+Q HG+  ++  +  + +  +L+ MYS+C  +  +  V  S+ E++ V++ T+I  
Sbjct: 338 VELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISA 397

Query: 198 YGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACS-----------YSGLVDKGLKIF 344
           + Q+GL D  L +   M + G   D IT  A+LSA S           +  L+ +G++ F
Sbjct: 398 FVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQ-F 456

Query: 345 ESMESSYGILPTTEHYCCVVDMLGRAGRVVEAYEFVKALGDRANAAGIWGSLLGACRMHG 524
           E M S             ++DM  ++G +  + +  +  G        W S++     +G
Sbjct: 457 EGMNS------------YLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNG 504

Query: 525 EMELGRIISDRLFE 566
             E   ++  ++ E
Sbjct: 505 HTEETFLVFRKMLE 518


>ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540232|gb|EEF41805.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 695

 Score =  308 bits (790), Expect = 5e-82
 Identities = 142/229 (62%), Positives = 185/229 (80%)
 Frame = +3

Query: 12   GGISLGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDSIPEKNTVTYTTII 191
            G I+LGKQ+HG +IR+S+D N+FV TAL+DMYSK  +I+YAE V     E+N+VTYTT+I
Sbjct: 421  GSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMI 480

Query: 192  LGYGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACSYSGLVDKGLKIFESMESSYGI 371
            LGYGQHG+G+ ALS+F +M + G+ PDAITFVA+LSACSY+GLVD+GL+IFESM+  + I
Sbjct: 481  LGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKI 540

Query: 372  LPTTEHYCCVVDMLGRAGRVVEAYEFVKALGDRANAAGIWGSLLGACRMHGEMELGRIIS 551
             P+T HYCCV DMLGR GRV+EAYEFVK LG+  +   IWGSLLGACR+HG +ELG  +S
Sbjct: 541  QPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLHGHIELGEEVS 600

Query: 552  DRLFEVEEDNDVTGYHVLLSNIYADKEMWDSADRVRKNMREKGLRKETG 698
            +RL E+   + + GY VLLSN+YA++  W++ D++RK+MREKGLRKE G
Sbjct: 601  NRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEVG 649



 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
 Frame = +3

Query: 24  LGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDS--IPEKNTVTYTTIILG 197
           +GKQ H Y IRH I  +  + + LIDMY+K   I  +++V ++  I  ++  T+  +I G
Sbjct: 323 IGKQTHAYLIRHGIKFDG-MDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAG 381

Query: 198 YGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACSYSGLVDKGLKIFESMESSYGILP 377
           Y Q+GL ++A   F+ M E  + P+A+T  +IL ACS  G ++ G K    +   Y +  
Sbjct: 382 YTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLG-KQLHGVSIRYSLDQ 440

Query: 378 TTEHYCCVVDMLGRAGRV 431
                  +VDM  ++G +
Sbjct: 441 NIFVRTALVDMYSKSGAI 458



 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 44/183 (24%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
 Frame = +3

Query: 18  ISLGKQIHGYAIRHSIDHNVFVGTALIDMYSKCASISYAEKVCDSIPEKNTVTYTTIILG 197
           + LG+Q+H + +++    +V V  A++ MYS+C S+  + +V + +PEK+ V++ T+I G
Sbjct: 220 LGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISG 279

Query: 198 YGQHGLGDRALSMFQTMSEFGMNPDAITFVAILSACS-----------YSGLVDKGLKIF 344
           + Q+GL +  L +   M + G   D++T  ++LSA S           ++ L+  G+K F
Sbjct: 280 FIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIK-F 338

Query: 345 ESMESSYGILPTTEHYCCVVDMLGRAGRVVEAYEFVKALGDRANAAGIWGSLLGACRMHG 524
           + M+S             ++DM  ++G +  +    +    +      W +++     +G
Sbjct: 339 DGMDS------------YLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNG 386

Query: 525 EME 533
            +E
Sbjct: 387 LVE 389