BLASTX nr result
ID: Coptis21_contig00030401
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00030401
(556 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 101 5e-25
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 100 8e-24
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 100 1e-23
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 100 1e-23
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 100 1e-23
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 101 bits (251), Expect(2) = 5e-25
Identities = 50/141 (35%), Positives = 79/141 (56%)
Frame = -1
Query: 424 SQLIHNPKLPRTLKRLLHGIFKVKLTRKFPNYLGVLSLLGHASQDTFAPLVERFQSRLAG 245
S++ + + R L +L+ + TR+ YLG+ L ++DTF ++E+ +RLAG
Sbjct: 244 SKIFFSENVSRDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAG 303
Query: 244 WKAATLSKGGRLTLVQSVLSALPTYIMLCTLLPAGVLEKLERIRRNFLWRHDNRQHKMHY 65
WK LS GR+TL ++VLS++P + M LP L+ L+++ R+FLW Q K H
Sbjct: 304 WKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHL 363
Query: 64 FNWQLACTSKRYGGLGIPNLQ 2
+W+ C + GGLGI Q
Sbjct: 364 ISWKRVCKPRSEGGLGIRKAQ 384
Score = 38.5 bits (88), Expect(2) = 5e-25
Identities = 14/44 (31%), Positives = 30/44 (68%)
Frame = -3
Query: 554 HLMYADDVLIFGWCNLDEAHTLNDT*QRYCEASGQTMNLQKSQL 423
H+ +ADD+++F ++ + + +R+C ASGQ ++L+KS++
Sbjct: 203 HICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKI 246
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 100 bits (249), Expect(2) = 8e-24
Identities = 45/125 (36%), Positives = 72/125 (57%)
Frame = -1
Query: 388 LKRLLHGIFKVKLTRKFPNYLGVLSLLGHASQDTFAPLVERFQSRLAGWKAATLSKGGRL 209
LKR + I +V + YLG+ L S++TF ++++ +++L+ WKA++L+ GR
Sbjct: 1267 LKRAIGSILQVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRR 1326
Query: 208 TLVQSVLSALPTYIMLCTLLPAGVLEKLERIRRNFLWRHDNRQHKMHYFNWQLACTSKRY 29
LVQ+ L+ +PTY M LP ++++ RNFLW HD K+H NW C +
Sbjct: 1327 VLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNE 1386
Query: 28 GGLGI 14
GGLG+
Sbjct: 1387 GGLGL 1391
Score = 35.0 bits (79), Expect(2) = 8e-24
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -3
Query: 554 HLMYADDVLIFGWCNLDEAHTLNDT*QRYCEASGQTMNLQKSQL 423
HL +ADD+++FG + +A + D + +ASG +N KS L
Sbjct: 1214 HLFFADDLMLFGEASEHQAQIMFDCLDSFSDASGLKVNFSKSLL 1257
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
Length = 947
Score = 99.8 bits (247), Expect(2) = 1e-23
Identities = 54/137 (39%), Positives = 77/137 (56%)
Frame = -1
Query: 424 SQLIHNPKLPRTLKRLLHGIFKVKLTRKFPNYLGVLSLLGHASQDTFAPLVERFQSRLAG 245
S++ + + R L++L+ +K TR+ YLG+ L ++DTF ++ER SRLAG
Sbjct: 396 SKIFFSKNVSRDLEKLISKESGIKSTRELGKYLGMPILQRRINKDTFGEVLERVSSRLAG 455
Query: 244 WKAATLSKGGRLTLVQSVLSALPTYIMLCTLLPAGVLEKLERIRRNFLWRHDNRQHKMHY 65
WK +LS GRLTL +SVLS +P + M LP LE L+++ R FL + K+H
Sbjct: 456 WKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLGSSAEKKKLHL 515
Query: 64 FNWQLACTSKRYGGLGI 14
W C K GGLGI
Sbjct: 516 VAWDRVCLPKSEGGLGI 532
Score = 35.4 bits (80), Expect(2) = 1e-23
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = -3
Query: 554 HLMYADDVLIFGWCNLDEAHTLNDT*QRYCEASGQTMNLQKSQL 423
H+ +ADD+++F ++ + + + +C ASGQ ++L KS++
Sbjct: 355 HICFADDLILFAEASVSQIRVIRRILETFCIASGQKVSLDKSKI 398
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 100 bits (249), Expect(2) = 1e-23
Identities = 45/125 (36%), Positives = 72/125 (57%)
Frame = -1
Query: 388 LKRLLHGIFKVKLTRKFPNYLGVLSLLGHASQDTFAPLVERFQSRLAGWKAATLSKGGRL 209
LKR + I +V + YLG+ L S++TF ++++ +++L+ WKA++L+ GR
Sbjct: 735 LKRAIGSILQVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRR 794
Query: 208 TLVQSVLSALPTYIMLCTLLPAGVLEKLERIRRNFLWRHDNRQHKMHYFNWQLACTSKRY 29
LVQ+ L+ +PTY M LP ++++ RNFLW HD K+H NW C +
Sbjct: 795 VLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNE 854
Query: 28 GGLGI 14
GGLG+
Sbjct: 855 GGLGL 859
Score = 34.3 bits (77), Expect(2) = 1e-23
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 554 HLMYADDVLIFGWCNLDEAHTLNDT*QRYCEASGQTMNLQKSQL 423
HL +ADD+++FG + +A + D + ASG +N KS L
Sbjct: 682 HLFFADDLMLFGEASEHQAQIMFDCLDSFSNASGLKVNFSKSLL 725
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 100 bits (249), Expect(2) = 1e-23
Identities = 45/125 (36%), Positives = 72/125 (57%)
Frame = -1
Query: 388 LKRLLHGIFKVKLTRKFPNYLGVLSLLGHASQDTFAPLVERFQSRLAGWKAATLSKGGRL 209
LKR + I +V + YLG+ L S++TF ++++ +++L+ WKA++L+ GR
Sbjct: 735 LKRAIGSILQVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRR 794
Query: 208 TLVQSVLSALPTYIMLCTLLPAGVLEKLERIRRNFLWRHDNRQHKMHYFNWQLACTSKRY 29
LVQ+ L+ +PTY M LP ++++ RNFLW HD K+H NW C +
Sbjct: 795 VLVQASLATVPTYTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNE 854
Query: 28 GGLGI 14
GGLG+
Sbjct: 855 GGLGL 859
Score = 34.3 bits (77), Expect(2) = 1e-23
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 554 HLMYADDVLIFGWCNLDEAHTLNDT*QRYCEASGQTMNLQKSQL 423
HL +ADD+++FG + +A + D + ASG +N KS L
Sbjct: 682 HLFFADDLMLFGEASEHQAQIMFDCLDSFSNASGLKVNFSKSLL 725