BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030366
         (1115 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    94   5e-17
ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    94   5e-17
ref|XP_003622277.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    88   3e-15
ref|XP_002319944.1| f-box family protein [Populus trichocarpa] g...    88   4e-15
ref|XP_002888725.1| F-box family protein [Arabidopsis lyrata sub...    86   1e-14

>ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
            gi|355478356|gb|AES59559.1| F-box/FBD/LRR-repeat protein
            [Medicago truncatula]
          Length = 428

 Score = 94.4 bits (233), Expect = 5e-17
 Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 7/350 (2%)
 Frame = +2

Query: 47   DRLTPLPLTIRNHILSFLPLKDQIRTTSLSTKWKTVPSFITHFDFNQLNFPDT------V 208
            DR++ LP  I + ILS LP+K+ +RT+ LSTKW+   + + +  F+     DT      +
Sbjct: 17   DRISSLPGHIIDQILSILPIKEAVRTSILSTKWRYKWATLPNLVFDSQCISDTSEDLLVI 76

Query: 209  KSHLKDIVYQTLIQHNTSSDIKLFKLTFHVDNNQDPYLFLDIKTFITFAIRHNVQNIDIS 388
            KS L  I+   L+ H  S  IK FKL     ++++     DI  +     R  V+   + 
Sbjct: 77   KSKLSRIIDHVLLLH--SGPIKKFKL-----SHRELIGVTDIDRWTLHLTRRPVKEFVLE 129

Query: 389  VLSGKLDNFLPRSLFTATCLFSLSFSNLKLTLPEKLQVKFPSLKSLSLFTVSFRDDGEAV 568
            +  G+    +P  LF+   L  L   N  L  P   Q  F +LKSL L  V+   D    
Sbjct: 130  IWKGQRYK-IPSCLFSCQGLHHLELFNCWLIPPSTFQ-GFRNLKSLDLQHVTLSQDA-FE 186

Query: 569  RIFRNCPSLEELSIVGCYFSSPDVLKFPGPNLRFLKLLGLSRFHEIEFSFPRLREIVYSG 748
             +   CP LE L+++   F   + L    PNL+F  + G  +F +I F       +V  G
Sbjct: 187  NLISTCPLLERLTLMN--FDGFNYLNIHAPNLQFFDIGG--KFEDISFKNTSQLAVVSIG 242

Query: 749  NPPVIREETLSCLSNAAFEFASPPKDFNGIDRNLIECRAFEILERVRNVRKLALEGLYIE 928
                               F S     +G   NL+     E L  +  +++L ++  +++
Sbjct: 243  ---------------LYVNFESSQGRLHGRTSNLV-----EFLIHLPRIQRLEIQSYFLK 282

Query: 929  FLTRHQELLARLPTSCATVKHLKLDL-YPDKKPVEVVMFLLRRYPNLQTL 1075
            +L     +  +LPT C  + +L + + + D K +   + L R  PNL+ L
Sbjct: 283  YLAL-GAVPVKLPTPCIDLSYLSIRINFYDSKEISAALCLFRSSPNLREL 331


>ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
            gi|355478355|gb|AES59558.1| F-box/FBD/LRR-repeat protein
            [Medicago truncatula]
          Length = 660

 Score = 94.4 bits (233), Expect = 5e-17
 Identities = 94/350 (26%), Positives = 154/350 (44%), Gaps = 7/350 (2%)
 Frame = +2

Query: 47   DRLTPLPLTIRNHILSFLPLKDQIRTTSLSTKWKTVPSFITHFDFNQLNFPDT------V 208
            DR++ LP  I + ILS LP+K+ +RT+ LSTKW+   + + +  F+     DT      +
Sbjct: 249  DRISSLPGHIIDQILSILPIKEAVRTSILSTKWRYKWATLPNLVFDSQCISDTSEDLLVI 308

Query: 209  KSHLKDIVYQTLIQHNTSSDIKLFKLTFHVDNNQDPYLFLDIKTFITFAIRHNVQNIDIS 388
            KS L  I+   L+ H  S  IK FKL     ++++     DI  +     R  V+   + 
Sbjct: 309  KSKLSRIIDHVLLLH--SGPIKKFKL-----SHRELIGVTDIDRWTLHLTRRPVKEFVLE 361

Query: 389  VLSGKLDNFLPRSLFTATCLFSLSFSNLKLTLPEKLQVKFPSLKSLSLFTVSFRDDGEAV 568
            +  G+    +P  LF+   L  L   N  L  P   Q  F +LKSL L  V+   D    
Sbjct: 362  IWKGQRYK-IPSCLFSCQGLHHLELFNCWLIPPSTFQ-GFRNLKSLDLQHVTLSQDA-FE 418

Query: 569  RIFRNCPSLEELSIVGCYFSSPDVLKFPGPNLRFLKLLGLSRFHEIEFSFPRLREIVYSG 748
             +   CP LE L+++   F   + L    PNL+F  + G  +F +I F       +V  G
Sbjct: 419  NLISTCPLLERLTLMN--FDGFNYLNIHAPNLQFFDIGG--KFEDISFKNTSQLAVVSIG 474

Query: 749  NPPVIREETLSCLSNAAFEFASPPKDFNGIDRNLIECRAFEILERVRNVRKLALEGLYIE 928
                               F S     +G   NL+     E L  +  +++L ++  +++
Sbjct: 475  ---------------LYVNFESSQGRLHGRTSNLV-----EFLIHLPRIQRLEIQSYFLK 514

Query: 929  FLTRHQELLARLPTSCATVKHLKLDL-YPDKKPVEVVMFLLRRYPNLQTL 1075
            +L     +  +LPT C  + +L + + + D K +   + L R  PNL+ L
Sbjct: 515  YLAL-GAVPVKLPTPCIDLSYLSIRINFYDSKEISAALCLFRSSPNLREL 563


>ref|XP_003622277.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
           gi|355497292|gb|AES78495.1| F-box/FBD/LRR-repeat protein
           [Medicago truncatula]
          Length = 356

 Score = 88.2 bits (217), Expect = 3e-15
 Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 2/188 (1%)
 Frame = +2

Query: 47  DRLTPLPLTIRNHILSFLPLKDQIRTTSLSTKWKTVPSFITHFDFNQLNFPDTVKSHLKD 226
           DR++ LP ++  HILSFLP K+   T+ LS +W  +   +   DF+  NF  T  S  + 
Sbjct: 11  DRVSVLPDSVICHILSFLPTKESAATSILSKRWNPLWLSVLTLDFDDQNF--TEFSTFRH 68

Query: 227 IVYQTLIQHN-TSSDIKLFKLTFHVDNNQDPYLFLDIKTFITFAIRHNVQNIDISVLSGK 403
            VY  +   N T   I+ F+L     +  +P+   D+K FI    +  +QN+++ +   K
Sbjct: 69  FVYSVIALRNITLQTIQSFRLKCGNSSGFNPH---DVKRFIHAIFQRGIQNLNLEMSPFK 125

Query: 404 LDNFLPRSLFTATCLFSLSFSNLKLTLPEKLQVKFPSLKSLSLFTVSF-RDDGEAVRIFR 580
           L   LP  +F+ + L +L      L +       FP LK+L L+T+SF RD    +R+ +
Sbjct: 126 LGFKLPHCVFSCSNLTALKLKG--LAIDYSCDFNFPLLKTLHLYTISFGRDRDCFLRLLK 183

Query: 581 NCPSLEEL 604
            CP LE+L
Sbjct: 184 GCPILEDL 191


>ref|XP_002319944.1| f-box family protein [Populus trichocarpa]
            gi|222858320|gb|EEE95867.1| f-box family protein [Populus
            trichocarpa]
          Length = 511

 Score = 87.8 bits (216), Expect = 4e-15
 Identities = 98/388 (25%), Positives = 159/388 (40%), Gaps = 41/388 (10%)
 Frame = +2

Query: 47   DRLTPLPLTIRNHILSFLPLKDQIRTTSLSTKWKTVPSFITHFDFNQLNFPDTVKSHLK- 223
            DR++ LP  I +HIL  LPLK   +T+ LS +W+++ S     DF  +N    + S  K 
Sbjct: 24   DRISDLPDAILHHILLLLPLKSIAQTSVLSQRWRSLWSSFPDLDFTTMNPSKAICSTRKL 83

Query: 224  ---------DIVYQTLIQHNTSSDIKLFKLTFHVDNNQDPYLFLDIKTFITFAIRHNVQN 376
                     D +   L   +  SD++  +   H+        F  +   I  AIR NVQ 
Sbjct: 84   KSKRWWPSMDFIANVLALRDKHSDLRALRFRAHLS-------FSHLNGLIRRAIRCNVQE 136

Query: 377  IDISVLSGKLDNFLPRSLFTATCLFSLS----FSNLKLTLPEKLQVKFPSLKSLSLFTVS 544
            +D+ V +G   NF PR + T+  L  L     +   +L     + + FPSL +LSL  V 
Sbjct: 137  LDVEVATGDYFNF-PRGVITSESLRVLKLRSRYPGFRLLPSSVMTIGFPSLHTLSLSLVI 195

Query: 545  FRDDGEAVRIFRN-----------------------CPSLEELSIVGCY-FSSPDVLKFP 652
              +    + +F                         C +LE+L+I  C+   S D+    
Sbjct: 196  LYEQSSLLDLFTESSFPCLKNLNLDACFGMKHLKVCCRALEDLTIENCFQLHSLDICSAK 255

Query: 653  GPNLRFLKLL-GLSRFHEIEFSFPRLREIVYSGNPPVIREE--TLSCLSNAAFEFASPPK 823
              NLR        S     + + PRLR I +  N          L+ L  A+  F+   +
Sbjct: 256  LENLRVASCFDAYSDKTWFKVNAPRLRGISWEYNSITASSSLVNLTSLHEASVGFSLLHE 315

Query: 824  DFNGIDRNLIECRAFEILERVRNVRKLALEGLYIEFLTRHQELLARLPTSCATVKHLKLD 1003
            + + +++    C     L  + +V  L L+   +E L+   +++  L      +K L+L 
Sbjct: 316  NLS-VEKLQSVC---NFLSGLSHVHSLTLDSQCVEILSNKNDII-NLLHPFNNLKVLELH 370

Query: 1004 LYPDKKPVEVVMFLLRRYPNLQTLCISI 1087
               +K  V  + FL R  P L TL + I
Sbjct: 371  TGFEKNNVPGLAFLFRSSPTLHTLILKI 398


>ref|XP_002888725.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297334566|gb|EFH64984.1| F-box family protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 428

 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 90/349 (25%), Positives = 155/349 (44%), Gaps = 4/349 (1%)
 Frame = +2

Query: 47   DRLTPLPLTIRNHILSFLPLKDQIRTTSLSTKWKTVPSFITHFDFNQLNFPDTVKSHLKD 226
            D ++ LP  +   +L  LP KD ++++ LST+W+ +   +   D +  +F +   + L  
Sbjct: 18   DWISKLPDCLLCEVLLNLPTKDVVKSSVLSTRWRNLWKHVPGLDLDNSDFQE-FNTFLNF 76

Query: 227  IVYQTLIQHNTSSDIKLFKLTFHVDNNQ-DPYLFLDIKTFITFAIRHNVQNIDISVLS-G 400
            +   + +  NT S ++ F L +  D++  DP + + I  +I   +  NV++ID+   S G
Sbjct: 77   V--DSFLDFNTESCLQYFMLKYDCDDDDYDPEISI-IGRWINTIVTRNVKHIDVLDDSYG 133

Query: 401  KLDNFLPRSLFTATCLFSLSFSNLKLTLPEKLQVKFPSLKSLSLFTVSFRDDGEAVRIFR 580
              +  LP S++T   L SL      LTLP    V  PSLK ++L    F DD     +  
Sbjct: 134  SWEVQLPSSIYTCESLVSLKLC--ALTLPSPKFVSLPSLKVMALLIAKFADDLALETLIT 191

Query: 581  NCPSLEELSIVGCYFSSPDVLKFPGPNLRFLKLLGLSRFHEIEFSFPRLREIVYSGNPPV 760
             CP LE L+I  C+    +VL+    +L       LS  H  +     + ++V   + P 
Sbjct: 192  KCPVLESLTIERCFCDEIEVLRVRSQSL-------LSFTHVADSDEGVVEDLVVEIDAPK 244

Query: 761  IREETLSCLSNAAFEFASPPKDFNGIDRNLIECRAFEILERVRNVRKLALEGLYIEFLTR 940
            +    LS    A+F    P K        L+E    +I+  + +  K   + L       
Sbjct: 245  LEYLRLSDYRVASFILNKPGK--------LVEA-DIDIVFNLSSENKFNPDDL------P 289

Query: 941  HQELLARLPTSCATVKHLKLDLYPDKKPVEVVMF--LLRRYPNLQTLCI 1081
             + ++     + +TVK L +    +  P  V     +LR  PNL+TL +
Sbjct: 290  KRTMIRNFLVAISTVKDLIISSNVNDYPYSVTYLSCVLRSCPNLKTLVV 338