BLASTX nr result

ID: Coptis21_contig00030322 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030322
         (514 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002304497.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06

>ref|XP_002304497.1| predicted protein [Populus trichocarpa] gi|222841929|gb|EEE79476.1|
           predicted protein [Populus trichocarpa]
          Length = 381

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 23/163 (14%)
 Frame = +2

Query: 83  VLPVPHQYYVCGSCLGWLVLIDDR---------LDMQLINPLSGTKFEXXXXXXXXXXXX 235
           +L +P     CGS  GWL+L D +          DM ++NP+SG KFE            
Sbjct: 61  MLTIPLAGKYCGSYRGWLILEDRKEEAFTNKINKDMLVLNPVSGEKFELPDVSTLPPY-- 118

Query: 236 GDDFC------KFNVCRAVMSISPITSASSQTTVLIIYGTPPSLAFSKPGDKSWTPVESA 397
           G D          ++ + V+S  P  S S+   VL IY     +A+ K G++ W  +   
Sbjct: 119 GTDGVPSWYPRSCSIEKVVLSCCPNPSESNSCLVLAIYNYG-QIAYCKLGNREWRSIGFG 177

Query: 398 RPITTEGLIFLGYLDAIYYKERFYVTY--------NCGGIDFC 502
                  +   GYLDA+Y  +RFYV +        N  G D C
Sbjct: 178 H----SSIDHEGYLDAVYCHDRFYVLHVTKKLFVCNFDGSDLC 216


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