BLASTX nr result
ID: Coptis21_contig00030259
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00030259
(504 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003614469.1| Helicase-like protein [Medicago truncatula] ... 47 2e-09
gb|EEC68598.1| hypothetical protein OsI_36954 [Oryza sativa Indi... 44 1e-07
ref|NP_001064280.2| Os10g0192300 [Oryza sativa Japonica Group] g... 38 1e-06
gb|AAM92800.1| putative DNA helicase homolog [Oryza sativa Japon... 38 1e-06
gb|AAP52492.2| hypothetical protein LOC_Os10g10730 [Oryza sativa... 38 1e-06
>ref|XP_003614469.1| Helicase-like protein [Medicago truncatula]
gi|355515804|gb|AES97427.1| Helicase-like protein
[Medicago truncatula]
Length = 377
Score = 47.0 bits (110), Expect(3) = 2e-09
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 59 AYHNCARNYIDSSVLQPFELPNARSCHHCNVRLFAHETEEICCLNG 196
A HN ARN+ ++ ++ LP R+C CN +LF ET+ +CC NG
Sbjct: 103 AIHNNARNFKNTVMMINALLPTPRTCRRCNTKLFYKETQYMCCKNG 148
Score = 30.8 bits (68), Expect(3) = 2e-09
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +1
Query: 226 QDLLNLFT-TSSEGVHYFRENIRSYNHVL 309
++L LF+ T+ EG H FR+NIR YNHV+
Sbjct: 159 EELQQLFSDTTIEGRH-FRQNIRGYNHVM 186
Score = 28.1 bits (61), Expect(3) = 2e-09
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 306 IGVHIDENLASGRNGMYTYR 365
+GVHIDE + + +G+YT+R
Sbjct: 191 LGVHIDETMHATSHGIYTFR 210
>gb|EEC68598.1| hypothetical protein OsI_36954 [Oryza sativa Indica Group]
Length = 909
Score = 43.9 bits (102), Expect(3) = 1e-07
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 306 IGVHIDENLASGRNGMYTYRAQGSICHRIGDLSEAGKRPRYI 431
+GV +D+ +G +G+YT+RAQG I HRI L PR++
Sbjct: 336 LGVTLDQRYCNGSSGVYTFRAQGQIYHRIDQLQPGDNGPRHL 377
Score = 29.3 bits (64), Expect(3) = 1e-07
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 95 SVLQPFELPNARSCHHCNVRLFAHETEEICCLNG*VSLPVPPIP 226
S+L+P AR+C +C + F +E+ CC G + +P
Sbjct: 264 SILRP-----ARNCSYCGAKRFQYESPAWCCRKGKIVFATHGVP 302
Score = 26.2 bits (56), Expect(3) = 1e-07
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 229 DLLNLFTTSS-EGVHYFRENIRSYN 300
+L LFT+ + E YFRENIR +N
Sbjct: 304 ELHRLFTSQTDEDAKYFRENIRYFN 328
>ref|NP_001064280.2| Os10g0192300 [Oryza sativa Japonica Group]
gi|255679265|dbj|BAF26194.2| Os10g0192300 [Oryza sativa
Japonica Group]
Length = 1575
Score = 37.7 bits (86), Expect(3) = 1e-06
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 306 IGVHIDENLASGRNGMYTYRAQGSICHRIGDLSEAGKRPRYI 431
+GV +DE + R+G+YT+RA G I H I + P ++
Sbjct: 302 LGVSLDERYTNMRSGVYTFRAHGQIYHNIHSFGQRDNAPEHL 343
Score = 35.4 bits (80), Expect(3) = 1e-06
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 56 HAYHNCARNYIDSSVLQPFELPNARSCHHCNVRLFAHETEEICCLNG*VSL 208
H Y N RN + VL+P +C HC + F +ET CC G + L
Sbjct: 221 HVYSNIPRN---THVLKP-----TANCKHCGAKKFQYETNGFCCRGGKIKL 263
Score = 23.1 bits (48), Expect(3) = 1e-06
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 229 DLLNLFTTSSEGVHYFRENIRSYN 300
+L+ L+++ +FR+NIR +N
Sbjct: 271 ELMRLWSSMDSDATHFRDNIRFFN 294
>gb|AAM92800.1| putative DNA helicase homolog [Oryza sativa Japonica Group]
Length = 1443
Score = 37.7 bits (86), Expect(3) = 1e-06
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 306 IGVHIDENLASGRNGMYTYRAQGSICHRIGDLSEAGKRPRYI 431
+GV +DE + R+G+YT+RA G I H I + P ++
Sbjct: 143 LGVSLDERYTNMRSGVYTFRAHGQIYHNIHSFGQRDNAPEHL 184
Score = 35.4 bits (80), Expect(3) = 1e-06
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 56 HAYHNCARNYIDSSVLQPFELPNARSCHHCNVRLFAHETEEICCLNG*VSL 208
H Y N RN + VL+P +C HC + F +ET CC G + L
Sbjct: 62 HVYSNIPRN---THVLKP-----TANCKHCGAKKFQYETNGFCCRGGKIKL 104
Score = 23.1 bits (48), Expect(3) = 1e-06
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 229 DLLNLFTTSSEGVHYFRENIRSYN 300
+L+ L+++ +FR+NIR +N
Sbjct: 112 ELMRLWSSMDSDATHFRDNIRFFN 135
>gb|AAP52492.2| hypothetical protein LOC_Os10g10730 [Oryza sativa Japonica Group]
Length = 1416
Score = 37.7 bits (86), Expect(3) = 1e-06
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 306 IGVHIDENLASGRNGMYTYRAQGSICHRIGDLSEAGKRPRYI 431
+GV +DE + R+G+YT+RA G I H I + P ++
Sbjct: 143 LGVSLDERYTNMRSGVYTFRAHGQIYHNIHSFGQRDNAPEHL 184
Score = 35.4 bits (80), Expect(3) = 1e-06
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 56 HAYHNCARNYIDSSVLQPFELPNARSCHHCNVRLFAHETEEICCLNG*VSL 208
H Y N RN + VL+P +C HC + F +ET CC G + L
Sbjct: 62 HVYSNIPRN---THVLKP-----TANCKHCGAKKFQYETNGFCCRGGKIKL 104
Score = 23.1 bits (48), Expect(3) = 1e-06
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 229 DLLNLFTTSSEGVHYFRENIRSYN 300
+L+ L+++ +FR+NIR +N
Sbjct: 112 ELMRLWSSMDSDATHFRDNIRFFN 135