BLASTX nr result
ID: Coptis21_contig00030251
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00030251
(669 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003539523.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 137 1e-30
ref|XP_003543355.1| PREDICTED: pentatricopeptide repeat-containi... 135 7e-30
ref|XP_002533283.1| pentatricopeptide repeat-containing protein,... 135 9e-30
ref|XP_003593034.1| Pentatricopeptide repeat-containing protein ... 133 3e-29
gb|ABN08280.1| Tetratricopeptide-like helical [Medicago truncatula] 133 3e-29
>ref|XP_003539523.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g11900-like [Glycine max]
Length = 369
Score = 137 bits (346), Expect = 1e-30
Identities = 66/121 (54%), Positives = 92/121 (76%)
Frame = -1
Query: 669 KESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRENGVDPDLQTYTAVIDSFGRLGHI 490
K +S IPDI+SYNTLIN +K+GR D+C ++ +EM ENGV+PDL TYTA+I+ FGR G++
Sbjct: 237 KNTSFIPDIVSYNTLINGLQKIGRFDMCFLYFKEMTENGVEPDLLTYTALIEIFGRSGNV 296
Query: 489 KEALGYFGQMKRRGIHPSIYIYRSLISNSKKAEKLDLATSLLEEMNFSA*IISPYSVFKE 310
+E+L F +MK +G+ PSIYIYRSLI N K K++LAT LLEE+N S+ ++ FK+
Sbjct: 297 EESLKCFREMKLKGVLPSIYIYRSLIHNLTKTGKVELATELLEELNSSSTCLAGPEDFKQ 356
Query: 309 E 307
+
Sbjct: 357 K 357
Score = 58.9 bits (141), Expect = 9e-07
Identities = 30/93 (32%), Positives = 45/93 (48%)
Frame = -1
Query: 633 NTLINSFRKLGRLDLCVVFLQEMRENGVDPDLQTYTAVIDSFGRLGHIKEALGYFGQMKR 454
N +I +F K G+ D +V ++ G DL TY V+D G GH+ E L F +K
Sbjct: 179 NKIIFAFAKFGQRDKSLVIFDHLKRQGYGLDLVTYNIVLDILGHTGHMDEMLDVFASIKN 238
Query: 453 RGIHPSIYIYRSLISNSKKAEKLDLATSLLEEM 355
P I Y +LI+ +K + D+ +EM
Sbjct: 239 TSFIPDIVSYNTLINGLQKIGRFDMCFLYFKEM 271
>ref|XP_003543355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Glycine max]
Length = 366
Score = 135 bits (340), Expect = 7e-30
Identities = 64/121 (52%), Positives = 90/121 (74%)
Frame = -1
Query: 669 KESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRENGVDPDLQTYTAVIDSFGRLGHI 490
K++ +PD +SYNTLIN RK GR D+C V+ +EM E GV+PDL TYTA+I+ FGR G++
Sbjct: 237 KDTGFVPDTVSYNTLINGLRKAGRFDMCFVYFKEMTEKGVEPDLLTYTAIIEIFGRSGNV 296
Query: 489 KEALGYFGQMKRRGIHPSIYIYRSLISNSKKAEKLDLATSLLEEMNFSA*IISPYSVFKE 310
+E+L F +MK +G+ PSIYIYRSLI N K K++LAT LLEE+N S+ ++ + FK+
Sbjct: 297 EESLKCFREMKLKGVLPSIYIYRSLIHNLNKTGKVELATELLEELNSSSTCLAGPADFKQ 356
Query: 309 E 307
+
Sbjct: 357 K 357
Score = 60.1 bits (144), Expect = 4e-07
Identities = 31/93 (33%), Positives = 46/93 (49%)
Frame = -1
Query: 633 NTLINSFRKLGRLDLCVVFLQEMRENGVDPDLQTYTAVIDSFGRLGHIKEALGYFGQMKR 454
N +I +F K G+ D +V ++ G DL TY V+D GR G + E L F +K
Sbjct: 179 NKIIFAFAKCGQRDKSLVIFDHLKRQGYGLDLVTYNIVLDILGRTGRVDEMLDVFASIKD 238
Query: 453 RGIHPSIYIYRSLISNSKKAEKLDLATSLLEEM 355
G P Y +LI+ +KA + D+ +EM
Sbjct: 239 TGFVPDTVSYNTLINGLRKAGRFDMCFVYFKEM 271
>ref|XP_002533283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526886|gb|EEF29094.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 405
Score = 135 bits (339), Expect = 9e-30
Identities = 64/108 (59%), Positives = 85/108 (78%)
Frame = -1
Query: 669 KESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRENGVDPDLQTYTAVIDSFGRLGHI 490
KE+ ++PD I YNTL+N +K GRLDLC+V+++EM E+G++ DL TYTA+I SFG+ GHI
Sbjct: 283 KEAGIVPDFICYNTLLNQLQKAGRLDLCLVYIREMGESGIEADLLTYTALIQSFGKSGHI 342
Query: 489 KEALGYFGQMKRRGIHPSIYIYRSLISNSKKAEKLDLATSLLEEMNFS 346
+E+L F MK R I PSIYIYRSLI+ +KK K++LA +LLEEMN S
Sbjct: 343 EESLRLFDDMKTRQIRPSIYIYRSLINTAKKMGKVELAMTLLEEMNAS 390
Score = 59.3 bits (142), Expect = 7e-07
Identities = 31/100 (31%), Positives = 51/100 (51%)
Frame = -1
Query: 645 IISYNTLINSFRKLGRLDLCVVFLQEMRENGVDPDLQTYTAVIDSFGRLGHIKEALGYFG 466
++ N +I +F + + D ++ ++++ PDL TY V+ GR G + E L F
Sbjct: 221 MVVINRIIFAFAECRQFDKALLIFDQIKDLEYKPDLITYNMVLHILGRAGRVDEMLYEFS 280
Query: 465 QMKRRGIHPSIYIYRSLISNSKKAEKLDLATSLLEEMNFS 346
MK GI P Y +L++ +KA +LDL + EM S
Sbjct: 281 SMKEAGIVPDFICYNTLLNQLQKAGRLDLCLVYIREMGES 320
>ref|XP_003593034.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482082|gb|AES63285.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 361
Score = 133 bits (335), Expect = 3e-29
Identities = 67/119 (56%), Positives = 87/119 (73%)
Frame = -1
Query: 669 KESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRENGVDPDLQTYTAVIDSFGRLGHI 490
KE+ +PD ISYNTLIN RK+GR D+C + +EM+ENG +PDL TYTA+ID GR G+I
Sbjct: 235 KETGFVPDTISYNTLINGLRKVGRSDMCFEYFKEMKENGNEPDLLTYTALIDISGRAGNI 294
Query: 489 KEALGYFGQMKRRGIHPSIYIYRSLISNSKKAEKLDLATSLLEEMNFSA*IISPYSVFK 313
+E+L +F +MK +GI PSI IYRSLI N K E ++LAT LLEEMN S+ ++ FK
Sbjct: 295 EESLKFFMEMKLKGILPSIQIYRSLIHNLNKTENIELATELLEEMNSSSTCLAVPGDFK 353
Score = 55.5 bits (132), Expect = 9e-06
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = -1
Query: 633 NTLINSFRKLGRLDLCVVFLQEMRE-NGVDPDLQTYTAVIDSFGRLGHIKEALGYFGQMK 457
N +I +F K G+ D + + +RE N DL TY V+D GR G + E L F +K
Sbjct: 176 NKIIFAFAKSGQKDSALAIFEHLREQNNSCLDLITYNIVLDILGRKGRVDEMLDMFASLK 235
Query: 456 RRGIHPSIYIYRSLISNSKKAEKLDLATSLLEEM 355
G P Y +LI+ +K + D+ +EM
Sbjct: 236 ETGFVPDTISYNTLINGLRKVGRSDMCFEYFKEM 269
>gb|ABN08280.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 349
Score = 133 bits (335), Expect = 3e-29
Identities = 67/119 (56%), Positives = 87/119 (73%)
Frame = -1
Query: 669 KESSLIPDIISYNTLINSFRKLGRLDLCVVFLQEMRENGVDPDLQTYTAVIDSFGRLGHI 490
KE+ +PD ISYNTLIN RK+GR D+C + +EM+ENG +PDL TYTA+ID GR G+I
Sbjct: 223 KETGFVPDTISYNTLINGLRKVGRSDMCFEYFKEMKENGNEPDLLTYTALIDISGRAGNI 282
Query: 489 KEALGYFGQMKRRGIHPSIYIYRSLISNSKKAEKLDLATSLLEEMNFSA*IISPYSVFK 313
+E+L +F +MK +GI PSI IYRSLI N K E ++LAT LLEEMN S+ ++ FK
Sbjct: 283 EESLKFFMEMKLKGILPSIQIYRSLIHNLNKTENIELATELLEEMNSSSTCLAVPGDFK 341
Score = 55.5 bits (132), Expect = 9e-06
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = -1
Query: 633 NTLINSFRKLGRLDLCVVFLQEMRE-NGVDPDLQTYTAVIDSFGRLGHIKEALGYFGQMK 457
N +I +F K G+ D + + +RE N DL TY V+D GR G + E L F +K
Sbjct: 164 NKIIFAFAKSGQKDSALAIFEHLREQNNSCLDLITYNIVLDILGRKGRVDEMLDMFASLK 223
Query: 456 RRGIHPSIYIYRSLISNSKKAEKLDLATSLLEEM 355
G P Y +LI+ +K + D+ +EM
Sbjct: 224 ETGFVPDTISYNTLINGLRKVGRSDMCFEYFKEM 257