BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030235
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsi...    94   1e-17
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                 88   8e-16
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              86   3e-15
emb|CAN79251.1| hypothetical protein VITISV_038223 [Vitis vinifera]    83   3e-14
emb|CAN78853.1| hypothetical protein VITISV_039252 [Vitis vinifera]    82   3e-14

>gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 889

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 44/110 (40%), Positives = 71/110 (64%)
 Frame = +2

Query: 2   LDSWDKRNGWRVFADGSTTDACSGIGVVLVTPDNNIMEQTMKLGFATSNNESEYDAVIAS 181
           LD  +    W +  DGS+    SG+G+ L +P   ++EQ+++LGF  SNNESEY+A+IA 
Sbjct: 634 LDGTNSNKKWLLHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAG 693

Query: 182 LRVAEDLGIDELPVYSDSNLVMCQANGGFATRCPRIAKYLEVLRKRAAKF 331
           +++A++ GI E+  YSDS LV  Q +G +  +  R+  YLE+++  A +F
Sbjct: 694 IKLAQEKGIREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQF 743


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 41/92 (44%), Positives = 62/92 (67%)
 Frame = +2

Query: 29  WRVFADGSTTDACSGIGVVLVTPDNNIMEQTMKLGFATSNNESEYDAVIASLRVAEDLGI 208
           W V  DG++    +GIGVVL+TP+  +ME++++LGF  +NNE+EY+A++A  ++   LG 
Sbjct: 534 WEVCTDGASNRKGAGIGVVLITPEKLVMEKSLRLGFIATNNEAEYEALLAGAQMVRHLGG 593

Query: 209 DELPVYSDSNLVMCQANGGFATRCPRIAKYLE 304
           + + +Y DS LV  Q NG F  R  R+ KYLE
Sbjct: 594 EVVELYCDSRLVFGQINGEFEVRDERMKKYLE 625


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 42/101 (41%), Positives = 65/101 (64%)
 Frame = +2

Query: 29  WRVFADGSTTDACSGIGVVLVTPDNNIMEQTMKLGFATSNNESEYDAVIASLRVAEDLGI 208
           W++  DGS+T   S +G+ L +P + I+EQ+ +L F  SNNE+EY+A+IA LR+A+ +G 
Sbjct: 451 WKLHVDGSSTKQGSVVGIKLESPTSEILEQSFRLLFDASNNEAEYEALIAGLRLAQGVGA 510

Query: 209 DELPVYSDSNLVMCQANGGFATRCPRIAKYLEVLRKRAAKF 331
            E+  Y DS LV+ Q NG +  +  R+  YLEV +  +  F
Sbjct: 511 KEILAYCDSQLVVNQFNGDYEAKDSRMEAYLEVAKDLSKNF 551


>emb|CAN79251.1| hypothetical protein VITISV_038223 [Vitis vinifera]
          Length = 665

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 38/106 (35%), Positives = 67/106 (63%)
 Frame = +2

Query: 14  DKRNGWRVFADGSTTDACSGIGVVLVTPDNNIMEQTMKLGFATSNNESEYDAVIASLRVA 193
           +++  W ++ DG++  + SG+G++L +P    +EQ ++LGF  SNNE+EY+A+++ L +A
Sbjct: 426 NEKEWWTLWVDGASRSSGSGVGLLLQSPTGEXLEQAIRLGFPASNNEAEYEAILSGLDLA 485

Query: 194 EDLGIDELPVYSDSNLVMCQANGGFATRCPRIAKYLEVLRKRAAKF 331
             L I +L VYSDS L++      +  +  RIA+YL  +R    +F
Sbjct: 486 LALSISKLKVYSDSQLIVRHVQKEYEAKDARIARYLTKVRDTLQRF 531


>emb|CAN78853.1| hypothetical protein VITISV_039252 [Vitis vinifera]
          Length = 995

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 38/105 (36%), Positives = 67/105 (63%)
 Frame = +2

Query: 17  KRNGWRVFADGSTTDACSGIGVVLVTPDNNIMEQTMKLGFATSNNESEYDAVIASLRVAE 196
           K+  W +  DG++  + SG+G++L +P    +EQ ++LGF+ SNNE+EY+A+++ L +A 
Sbjct: 450 KKEWWTLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLAL 509

Query: 197 DLGIDELPVYSDSNLVMCQANGGFATRCPRIAKYLEVLRKRAAKF 331
            L + +L +YSDS LV+ Q    +  +  R+A+YL  +R    +F
Sbjct: 510 ALSVSKLRIYSDSQLVVRQVQKEYEAKDARMARYLAKVRSTLQQF 554