BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030233
         (210 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi...    90   2e-16
ref|XP_002889556.1| pentatricopeptide repeat-containing protein ...    84   9e-15
ref|NP_172051.1| pentatricopeptide repeat-containing protein [Ar...    84   2e-14
ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
ref|XP_002515072.1| pentatricopeptide repeat-containing protein,...    79   4e-13

>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Vitis vinifera]
          Length = 503

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 42/69 (60%), Positives = 53/69 (76%)
 Frame = +2

Query: 2   LCREGRAIAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAKQVGCV 181
           LCR G    AV+VI EEM++D+CVPT   Y I++KGLC EGKS   + YL+KMA+QVGCV
Sbjct: 341 LCRCGGVEEAVKVIKEEMVEDSCVPTVRLYNIVLKGLCREGKSAFAVGYLEKMARQVGCV 400

Query: 182 ADKEIYNVL 208
           ADKE Y++L
Sbjct: 401 ADKETYSIL 409


>ref|XP_002889556.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335398|gb|EFH65815.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 503

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 36/69 (52%), Positives = 50/69 (72%)
 Frame = +2

Query: 2   LCREGRAIAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAKQVGCV 181
           LC+ G+   AV VI +EM++ +C+PT   Y +++KGLCDEGKSM  + YL KM+KQV CV
Sbjct: 342 LCKAGKLEEAVSVINKEMMEGHCLPTVGVYNVLIKGLCDEGKSMEAVGYLKKMSKQVSCV 401

Query: 182 ADKEIYNVL 208
           A++E Y  L
Sbjct: 402 ANEETYQTL 410


>ref|NP_172051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|334182311|ref|NP_001184914.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|75213450|sp|Q9SYK1.1|PPR11_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g05600 gi|4836924|gb|AAD30626.1|AC007153_18
           Hypothetical protein [Arabidopsis thaliana]
           gi|53828567|gb|AAU94393.1| At1g05600 [Arabidopsis
           thaliana] gi|56790224|gb|AAW30029.1| At1g05600
           [Arabidopsis thaliana] gi|332189741|gb|AEE27862.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana] gi|332189742|gb|AEE27863.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 36/69 (52%), Positives = 49/69 (71%)
 Frame = +2

Query: 2   LCREGRAIAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAKQVGCV 181
           LCR G+   AV VI +EM+  +C+PT   Y +++KGLCD+GKSM  + YL KM+KQV CV
Sbjct: 343 LCRAGKLKEAVSVINKEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAVGYLKKMSKQVSCV 402

Query: 182 ADKEIYNVL 208
           A++E Y  L
Sbjct: 403 ANEETYQTL 411


>ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|222843166|gb|EEE80713.1|
           predicted protein [Populus trichocarpa]
          Length = 503

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 35/69 (50%), Positives = 48/69 (69%)
 Frame = +2

Query: 2   LCREGRAIAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAKQVGCV 181
           LCR+GR+  A+ VI  EM++ N VP    Y +++KGLCD G S   + YL +MAKQVGCV
Sbjct: 341 LCRQGRSGEAINVIEREMVERNSVPNVRLYNVLLKGLCDAGNSAIAVSYLKRMAKQVGCV 400

Query: 182 ADKEIYNVL 208
           A++E Y +L
Sbjct: 401 ANQETYGIL 409


>ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545552|gb|EEF47056.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 34/69 (49%), Positives = 47/69 (68%)
 Frame = +2

Query: 2   LCREGRAIAAVQVIGEEMLDDNCVPTATTYKIMVKGLCDEGKSMAGIRYLDKMAKQVGCV 181
           LC+EG+   A+ V+  EM++ NCVP    Y I++KGLCD   S   ++YL +MAKQ GCV
Sbjct: 341 LCKEGKVHEAINVLEVEMVEGNCVPNVRLYNILLKGLCDARNSATAVKYLKRMAKQTGCV 400

Query: 182 ADKEIYNVL 208
           A+KE Y +L
Sbjct: 401 ANKETYCIL 409