BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030141
         (261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003628879.1| Pentatricopeptide repeat-containing protein ...    74   2e-11
emb|CBI35966.3| unnamed protein product [Vitis vinifera]               72   5e-11
ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi...    71   8e-11
ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containi...    69   3e-10
emb|CBI29077.3| unnamed protein product [Vitis vinifera]               69   3e-10

>ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355522901|gb|AET03355.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 633

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
 Frame = -3

Query: 259 FTWNSLFRT-----TPPHHALPLYTKMLQSNSHPNKFTFTFLLKACNK--ITKPYFAIHL 101
           F WN++ +      +PP H   L+  ML S+  P+ FTF FLLKAC    I+ P F   +
Sbjct: 81  FLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQFGFQV 140

Query: 100 HCHLIKFGFGSDAFLLSSLIGTYADAG 20
           HCH+++ GFGSD F+ ++L+  Y   G
Sbjct: 141 HCHVLRNGFGSDVFVNNALLNFYCGFG 167


>emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
 Frame = -3

Query: 259 FTWNSLFRTTP----PHHALPLYTKMLQSNSHPNKFTFTFLLKACNKITKPYFAIHLHCH 92
           F+WNSL R       P ++L LY KML+S++ P+ FTF F+LKAC+ +        +H H
Sbjct: 59  FSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTH 118

Query: 91  LIKFGFGSDAFLLSSLIGTY 32
           +++ GFGSD F+ +SLI  Y
Sbjct: 119 VLRLGFGSDLFVCNSLIDMY 138


>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449529868|ref|XP_004171920.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
 Frame = -3

Query: 259 FTWNSLFR----TTPPHHALPLYTKMLQSNSHPNKFTFTFLLKACNKITKPYFAIHLHCH 92
           F WNS+ R    +  P  AL  + +M+ S   PN +TF FLLK+C K+   +    +H H
Sbjct: 95  FIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAH 154

Query: 91  LIKFGFGSDAFLLSSLIGTYADAG 20
           ++K GF SD F+ +SLI  YA +G
Sbjct: 155 VLKLGFVSDVFIHTSLINMYAQSG 178


>ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
 Frame = -3

Query: 253 WNSLFR----TTPPHHALPLYTKMLQSNSHPNKFTFTFLLKACNKITKPYFAIHLHCHLI 86
           +NSL R    +  P  ALPLY  MLQS   P+  T+ F++KACN+ +  +F + +H H++
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 222

Query: 85  KFGFGSDAFLLSSLIGTYAD 26
           K GF  D++++SSLI  YA+
Sbjct: 223 KSGFECDSYIVSSLIHLYAN 242


>emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
 Frame = -3

Query: 253 WNSLFR----TTPPHHALPLYTKMLQSNSHPNKFTFTFLLKACNKITKPYFAIHLHCHLI 86
           +NSL R    +  P  ALPLY  MLQS   P+  T+ F++KACN+ +  +F + +H H++
Sbjct: 134 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 193

Query: 85  KFGFGSDAFLLSSLIGTYAD 26
           K GF  D++++SSLI  YA+
Sbjct: 194 KSGFECDSYIVSSLIHLYAN 213