BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030125
         (381 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   161   6e-38
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             160   8e-38
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             159   2e-37
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   159   3e-37
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                151   5e-35

>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  161 bits (407), Expect = 6e-38
 Identities = 74/126 (58%), Positives = 98/126 (77%)
 Frame = -3

Query: 379  YCYTRMPFGLKNAGETFQQLGEKMFERKIRKGIEIYIDDMVEKSMTEEEHLEGLRETFSI 200
            YCY  MPFGLKNAG T+ +L  +MF  ++   +E+YIDDM+ KS+  EEH+  LR+ F +
Sbjct: 900  YCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQV 959

Query: 199  LRTHNLKLNLEKCTFGVTTGKFLEYIVTHRGIEANPEQIRVLIEMPSPQNVKEVQRLAGR 20
            L  +N+KLN  KCTFGVT+G+FL Y+VT RGIEANP+QI  +I++PSP+N +EVQRL GR
Sbjct: 960  LNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGR 1019

Query: 19   VAALNR 2
            +AALNR
Sbjct: 1020 IAALNR 1025


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  160 bits (406), Expect = 8e-38
 Identities = 74/126 (58%), Positives = 98/126 (77%)
 Frame = -3

Query: 379  YCYTRMPFGLKNAGETFQQLGEKMFERKIRKGIEIYIDDMVEKSMTEEEHLEGLRETFSI 200
            YCY  M FGLKNAG T+Q+   KM   +I + +E+YIDDM+ KS+  E+H+E L + F +
Sbjct: 942  YCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDV 1001

Query: 199  LRTHNLKLNLEKCTFGVTTGKFLEYIVTHRGIEANPEQIRVLIEMPSPQNVKEVQRLAGR 20
            L T+ +KLN  KCTFGVT+G+FL Y+VT RGIEANP+QIR ++E+PSP+N +EVQRL GR
Sbjct: 1002 LNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGR 1061

Query: 19   VAALNR 2
            +AALNR
Sbjct: 1062 IAALNR 1067


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  159 bits (402), Expect = 2e-37
 Identities = 76/126 (60%), Positives = 94/126 (74%)
 Frame = -3

Query: 379 YCYTRMPFGLKNAGETFQQLGEKMFERKIRKGIEIYIDDMVEKSMTEEEHLEGLRETFSI 200
           YCY  MPFGLKNAG T+Q+L  KMF   + K +E+YIDDM+ KS+ +E+H++ L E F I
Sbjct: 139 YCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHVKHLEECFGI 198

Query: 199 LRTHNLKLNLEKCTFGVTTGKFLEYIVTHRGIEANPEQIRVLIEMPSPQNVKEVQRLAGR 20
           L  + +KLN  KCTFGV +G+FL YIVT RGIEAN  QI   + MPSP+N KEVQRL GR
Sbjct: 199 LNKYQMKLNPAKCTFGVPSGEFLGYIVTERGIEANSNQINAFLNMPSPRNFKEVQRLTGR 258

Query: 19  VAALNR 2
           +AALNR
Sbjct: 259 IAALNR 264


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  159 bits (401), Expect = 3e-37
 Identities = 75/126 (59%), Positives = 95/126 (75%)
 Frame = -3

Query: 379 YCYTRMPFGLKNAGETFQQLGEKMFERKIRKGIEIYIDDMVEKSMTEEEHLEGLRETFSI 200
           YCY  MPFGL+NAG T+ +L  KMF   + K +E+YIDDM+ KS+ +E+H++ L E F+I
Sbjct: 582 YCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAI 641

Query: 199 LRTHNLKLNLEKCTFGVTTGKFLEYIVTHRGIEANPEQIRVLIEMPSPQNVKEVQRLAGR 20
           L  + +KLN  KCTFGV +G+FL YIVT RGIEANP QI   + MPSP+N KEVQRL GR
Sbjct: 642 LNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGR 701

Query: 19  VAALNR 2
           +AALNR
Sbjct: 702 IAALNR 707


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  151 bits (382), Expect = 5e-35
 Identities = 71/126 (56%), Positives = 95/126 (75%)
 Frame = -3

Query: 379 YCYTRMPFGLKNAGETFQQLGEKMFERKIRKGIEIYIDDMVEKSMTEEEHLEGLRETFSI 200
           Y Y  MPFGLKNAG T+Q++  +MF+ ++ + +E YIDDMV KS    +HL+ L ETFS+
Sbjct: 211 YHYRVMPFGLKNAGSTYQRMVTRMFDSQLGRTMEAYIDDMVIKSKKVGDHLKDLHETFSV 270

Query: 199 LRTHNLKLNLEKCTFGVTTGKFLEYIVTHRGIEANPEQIRVLIEMPSPQNVKEVQRLAGR 20
           LR H L+LN  KC+FGV +GKFL Y++THRGIE NP+QI+ ++E+  P+N KEVQ+LAG 
Sbjct: 271 LRKHKLRLNASKCSFGVDSGKFLGYMITHRGIEFNPDQIKAILELHPPRNPKEVQKLAGM 330

Query: 19  VAALNR 2
            A LNR
Sbjct: 331 FAVLNR 336